cfortran.h File Reference

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Typedefs
typedef __int64	LONGLONG
typedef struct dsc $descriptor_s	fstring
typedef DSC	$DESCRIPTOR_A(1) fstringvector
typedef void(*	cfCAST_FUNCTION) (CF_NULL_PROTO)

Functions
static char *	c2fstrv (char *cstr, char *fstr, int elem_len, int sizeofcstr) static char *c2fstrv(cstr
	for (i=0;i< sizeofcstr/elem_len;i++) { int i
static char *	f2cstrv (char *fstr, char *cstr, int elem_len, int sizeofcstr) static char *f2cstrv(fstr
static char *	kill_trailing (char *s, char t) static char *kill_trailing(s
	if (e >s)
static char *	kill_trailingn (char *s, char t, char *e) static char *kill_trailingn(s
static char *	vkill_trailing (char *cstr, int elem_len, int sizeofcstr, char t) static char *vkill_trailing(cstr
static int	num_elem (char *strv, unsigned elem_len, int term_char, int num_term) static int num_elem(strv
	if (num_term==_NUM_ELEMS||num_term==_NUM_ELEM_ARG) return term_char
	if (num_term<=0) num_term
	for (num=0;;num++)
	if (0)
	return (int) num

Variables
static char	fstr = sizeofcstr - sizeofcstr/elem_len
static char	elem_len
static char sizeofcstr char *	cstr = sizeofcstr
int	sizeofcstr
static char t char *	s
char	t
	e = s + strlen(s)
cstr elem_len *	i
static int	term_char
static int num_term char *	strv
int	num_term

Typedef Documentation

$DESCRIPTOR_A

typedef DSC $DESCRIPTOR_A(1) fstringvector

Definition at line 628 of file cfortran.h.

cfCAST_FUNCTION

typedef void(* cfCAST_FUNCTION) (CF_NULL_PROTO)

Definition at line 751 of file cfortran.h.

fstring

typedef struct dsc $descriptor_s fstring

Definition at line 611 of file cfortran.h.

LONGLONG

typedef long long LONGLONG

Definition at line 100 of file cfortran.h.

Function Documentation

c2fstrv()

static char* c2fstrv ( char *  cstr, char *  fstr, int  elem_len, int  sizeofcstr  )

static

Referenced by if().

f2cstrv()

static char* f2cstrv ( char *  fstr, char *  cstr, int  elem_len, int  sizeofcstr  )

static

Referenced by for(), and if().

for() [1/2]

for

(

)

{ int i

Definition at line 544 of file cfortran.h.

References cstr, elem_len, f2cstrv(), fstr, i, kill_trailing(), s, sizeofcstr, and t.

for() [2/2]

for

(

num

= 0; ; num++

)

Definition at line 657 of file cfortran.h.

References i, and num_term.

if() [1/4]

else if	(	e	,
		s
	)

Initial value:

{ 
if (e==s) *e = '\0'

Definition at line 576 of file cfortran.h.

References cstr, e, elem_len, i, kill_trailingn(), s, sizeofcstr, t, and vkill_trailing().

Referenced by superlu_dist_distributed_matrix().

if() [2/4]

if

(

num_term

= =_NUM_ELEMS||num_term==_NUM_ELEM_ARG

)

if() [3/4]

if

(

num_term<=

0

)

if() [4/4]

if

(

0

)

Definition at line 662 of file cfortran.h.

References c2fstrv(), f2cstrv(), kill_trailing(), num_elem(), and vkill_trailing().

kill_trailing()

static char* kill_trailing ( char *  s, char  t  )

static

Referenced by for(), and if().

kill_trailingn()

static char* kill_trailingn ( char *  s, char  t, char *  e  )

static

Referenced by if().

num_elem()

static int num_elem ( char *  strv, unsigned  elem_len, int  term_char, int  num_term  )

static

Referenced by if(), and oomph::OcTree::setup_static_data().

return()

return

(

int

)

vkill_trailing()

static char* vkill_trailing ( char *  cstr, int  elem_len, int  sizeofcstr, char  t  )

static

Referenced by if().

Variable Documentation

cstr

return cstr = sizeofcstr

Definition at line 538 of file cfortran.h.

Referenced by for(), and if().

e

char * e = s + strlen(s)

Definition at line 575 of file cfortran.h.

Referenced by oomph::IMRByBDF::actions_after_timestep(), oomph::RefineableTetgenMesh< ELEMENT >::adapt(), oomph::TreeBasedRefineableMeshBase::adapt(), oomph::RefineableGmshTetMesh< ELEMENT >::adapt(), oomph::RefineableTriangleMesh< ELEMENT >::adapt(), oomph::TreeBasedRefineableMeshBase::adapt_mesh(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::adapt_temporal_mesh(), oomph::Problem::adaptive_unsteady_newton_solve(), oomph::NavierStokesSchurComplementPreconditioner::assemble_inv_press_and_veloc_mass_matrix_diagonal(), oomph::PressureBasedSolidLSCPreconditioner::assemble_mass_matrix_diagonal(), oomph::PeriodicOrbitTemporalMesh< oomph::SpectralPeriodicOrbitElement< NNODE_1D > >::assemble_residuals(), oomph::PeriodicOrbitTemporalMesh< oomph::SpectralPeriodicOrbitElement< NNODE_1D > >::assemble_residuals_and_jacobian(), oomph::TetMeshBase::assess_mesh_quality(), oomph::Problem::assign_eqn_numbers(), oomph::Mesh::assign_initial_values_impulsive(), oomph::CircularCylindricalShellMesh< ELEMENT >::assign_undeformed_positions(), oomph::Multi_domain_functions::aux_setup_multi_domain_interaction(), oomph::BackupMeshForProjection< GEOMETRIC_ELEMENT >::BackupMeshForProjection(), oomph::Problem::bifurcation_adapt_helper(), oomph::BlockPreconditioner< CRDoubleMatrix >::block_setup(), oomph::TetMeshBase::boundary_element_in_region_pt(), oomph::UnstructuredTwoDMeshGeometryBase::boundary_element_in_region_pt(), oomph::Mesh::boundary_element_pt(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::BrethertonSpineMesh(), oomph::ChannelSpineMesh< ELEMENT >::build_channel_spine_mesh(), oomph::Mesh::build_face_mesh(), oomph::GeompackQuadMesh< ELEMENT >::build_from_scaffold(), oomph::SimpleCubicTetMesh< ELEMENT >::build_from_scaffold(), oomph::QuadFromTriangleMesh< ELEMENT >::build_from_scaffold(), oomph::TetgenMesh< ELEMENT >::build_from_scaffold(), oomph::TriangleMesh< ELEMENT >::build_from_scaffold(), oomph::GmshTetMesh< ELEMENT >::build_from_scaffold(), oomph::MeshAsGeomObject::build_it(), oomph::BackwardStepQuadMesh< ELEMENT >::build_mesh(), oomph::FishMesh< ELEMENT >::build_mesh(), oomph::OneDMesh< oomph::SpectralPeriodicOrbitElement< NNODE_1D > >::build_mesh(), oomph::BrickFromTetMesh< ELEMENT >::build_mesh(), oomph::CircularCylindricalShellMesh< ELEMENT >::build_mesh(), oomph::TwoLayerSpineMesh< ELEMENT >::build_two_layer_mesh(), oomph::Mesh::calculate_predictions(), oomph::Problem::calculate_predictions(), oomph::ChannelWithLeafletMesh< ELEMENT >::ChannelWithLeafletMesh(), oomph::TriangleMesh< ELEMENT >::check_connections_of_polyline_nodes(), oomph::Mesh::check_halo_schemes(), oomph::RefineableQElement< 3 >::check_integrity(), oomph::RefineableQElement< 1 >::check_integrity(), oomph::RefineableQElement< 2 >::check_integrity(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::check_integrity(), oomph::Mesh::check_inverted_elements(), oomph::TriangleScaffoldMesh::check_mesh_integrity(), oomph::TimeStepper::check_predicted_values_up_to_date(), oomph::Mesh::classify_halo_and_haloed_nodes(), oomph::CollapsibleChannelMesh< ELEMENT >::CollapsibleChannelMesh(), oomph::TreeBasedRefineableMeshBase::complete_hanging_nodes(), oomph::FourierDecomposedHelmholtzDtNBoundaryElement< ELEMENT >::complete_setup_of_dependencies(), oomph::HelmholtzDtNBoundaryElement< ELEMENT >::complete_setup_of_dependencies(), oomph::RefineableTriangleMesh< ELEMENT >::compute_area_target(), oomph::TriangleMesh< ELEMENT >::compute_boundary_segments_connectivity_and_initial_zeta_values(), oomph::Mesh::compute_error(), oomph::HelmholtzDtNMesh< ELEMENT >::compute_fourier_components(), oomph::RefineableTriangleMesh< ELEMENT >::compute_global_node_names_and_shared_nodes(), oomph::TriangleMesh< ELEMENT >::compute_holes_left_by_halo_elements_helper(), oomph::Mesh::compute_norm(), oomph::RefineableTetMeshBase::compute_volume_target(), oomph::OcTreeForest::construct_up_right_equivalents(), oomph::Mesh::convert_to_boundary_node(), oomph::Problem::copy(), oomph::Problem::copy_haloed_eqn_numbers_helper(), oomph::RefineableTriangleMesh< ELEMENT >::create_adjacency_matrix_new_shared_edges_helper(), oomph::TwoDimensionalPMLHelper::create_bottom_left_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_bottom_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_bottom_right_pml_mesh(), oomph::Multi_domain_functions::create_external_halo_elements(), oomph::TwoDimensionalPMLHelper::create_left_pml_mesh(), oomph::GmshTetScaffoldMesh::create_mesh_from_msh_file(), oomph::RefineableTriangleMesh< ELEMENT >::create_new_shared_boundaries(), oomph::TriangleMesh< ELEMENT >::create_polylines_from_halo_elements_helper(), oomph::TwoDimensionalPMLHelper::create_right_pml_mesh(), oomph::TriangleMesh< ELEMENT >::create_shared_boundaries(), oomph::RefineableTriangleMesh< ELEMENT >::create_sorted_face_mesh_representation(), oomph::TwoDimensionalPMLHelper::create_top_left_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_top_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_top_right_pml_mesh(), oomph::TriangleHelper::create_triangulateio_from_polyfiles(), oomph::RefineableTriangleMesh< ELEMENT >::create_unsorted_face_mesh_representation(), oomph::CylinderWithFlagMesh< ELEMENT >::CylinderWithFlagMesh(), oomph::TopologicallyRectangularDomain::d2r_E(), oomph::TopologicallyRectangularDomain::d2r_N(), oomph::TopologicallyRectangularDomain::d2r_S(), oomph::TopologicallyRectangularDomain::d2r_W(), oomph::Mesh::delete_all_external_storage(), oomph::NavierStokesEquations< DIM >::delete_pressure_advection_diffusion_robin_elements(), oomph::OcTreeRoot::direction_of_neighbour(), oomph::Problem::disable_mass_matrix_reuse(), oomph::MacroElementNodeUpdateMesh::distribute(), oomph::Mesh::distribute(), oomph::Problem::distribute(), oomph::SolidHelpers::doc_2D_principal_stress(), oomph::Mesh::doc_boundary_coordinates(), oomph::Z2ErrorEstimator::doc_flux(), oomph::FSI_functions::doc_fsi(), oomph::Mesh::doc_mesh_distribution(), oomph::WomersleyProblem< WOMERSLEY_ELEMENT, DIM >::doc_solution(), oomph::Mesh::does_pointer_correspond_to_mesh_data(), oomph::TopologicallyRectangularDomain::dr_E(), oomph::TopologicallyRectangularDomain::dr_N(), oomph::TopologicallyRectangularDomain::dr_S(), oomph::TopologicallyRectangularDomain::dr_W(), oomph::DummyErrorEstimator::DummyErrorEstimator(), oomph::Mesh::dump(), oomph::Problem::dump(), oomph::TriangleHelper::dump_triangulateio(), oomph::TriangleScaffoldMesh::edge_boundary(), oomph::TetgenScaffoldMesh::edge_index(), oomph::TriangleScaffoldMesh::edge_index(), oomph::ElasticRefineableQuarterPipeMesh< ELEMENT >::ElasticRefineableQuarterPipeMesh(), oomph::TetgenScaffoldMesh::element_attribute(), oomph::TriangleScaffoldMesh::element_attribute(), oomph::SpineMesh::element_node_pt(), oomph::SolidMesh::element_node_pt(), oomph::Mesh::element_pt(), oomph::ChannelSpineMesh< ELEMENT >::element_reorder(), oomph::RectangularQuadMesh< ELEMENT >::element_reorder(), oomph::Problem::enable_mass_matrix_reuse(), oomph::Mesh::external_halo_element_pt(), oomph::Mesh::external_haloed_element_pt(), oomph::TetgenScaffoldMesh::face_boundary(), oomph::TetgenScaffoldMesh::face_index(), oomph::Mesh::face_index_at_boundary(), oomph::TetMeshBase::face_index_at_boundary_in_region(), oomph::UnstructuredTwoDMeshGeometryBase::face_index_at_boundary_in_region(), oomph::TriangleMesh< ELEMENT >::face_index_at_shared_boundary(), RefineableBinArray::fill_bin_array(), NonRefineableBinArray::fill_bin_array(), oomph::RefineableNavierStokesEquations< DIM >::fill_in_generic_pressure_advection_diffusion_contribution_nst(), oomph::NavierStokesEquations< DIM >::fill_in_generic_pressure_advection_diffusion_contribution_nst(), oomph::NetFluxControlElement::fill_in_generic_residual_contribution_flux_control(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::find_distance_to_free_surface(), oomph::MeshAsGeomObject::finite_element_pt(), oomph::Mesh::finite_element_pt(), oomph::FoldHandler::FoldHandler(), oomph::FSIDrivenCavityMesh< ELEMENT >::FSIDrivenCavityMesh(), oomph::QuadFromTriangleMesh< ELEMENT >::generic_constructor(), oomph::TriangleMesh< ELEMENT >::generic_constructor(), oomph::GeompackQuadScaffoldMesh::GeompackQuadScaffoldMesh(), oomph::Mesh::get_all_halo_data(), oomph::RefineableTriangleMesh< ELEMENT >::get_boundary_segment_nodes_helper(), oomph::FoepplvonKarmanVolumeConstraintElement< ELEMENT, MESH >::get_bounded_volume(), oomph::Problem::get_data_to_be_sent_during_load_balancing(), oomph::TriangleMesh< ELEMENT >::get_element_edges_on_boundary(), oomph::Z2ErrorEstimator::get_element_errors(), oomph::DummyErrorEstimator::get_element_errors(), oomph::TreeBasedRefineableMeshBase::get_elements_at_refinement_level(), oomph::RefineableTriangleMesh< ELEMENT >::get_face_mesh_representation(), oomph::Problem::get_flat_packed_refinement_pattern_for_load_balancing(), oomph::ImmersedRigidBodyElement::get_force_and_torque(), oomph::TriangleMesh< ELEMENT >::get_halo_elements_on_all_procs(), oomph::Problem::get_hessian_vector_products(), oomph::Problem::get_inverse_mass_matrix_times_residuals(), oomph::Problem::get_jacobian(), oomph::Problem::get_my_eqns(), oomph::Mesh::get_node_reordering(), oomph::NavierStokesSchurComplementPreconditioner::get_pressure_advection_diffusion_matrix(), oomph::Z2ErrorEstimator::get_recovered_flux_in_patch(), VorticitySmoother< ELEMENT >::get_recovered_vorticity_in_patch(), oomph::TreeBasedRefineableMeshBase::get_refinement_levels(), oomph::TreeBasedRefineableMeshBase::get_refinement_pattern(), oomph::RefineableTriangleMesh< ELEMENT >::get_required_elemental_information_helper(), oomph::RefineableTriangleMesh< ELEMENT >::get_required_elemental_information_load_balance_helper(), oomph::Problem::get_residuals(), CGALSamplePointContainer::get_sample_points(), oomph::RefineableTriangleMesh< ELEMENT >::get_shared_boundary_segment_nodes_helper(), oomph::Mesh::halo_element_pt(), oomph::Mesh::haloed_element_pt(), oomph::HopfHandler::HopfHandler(), oomph::HypreInterface::HypreInterface(), oomph::TriangleMesh< ELEMENT >::identify_boundary_segments_and_assign_initial_zeta_values(), if(), oomph::BiharmonicFluidProblem< DIM >::impose_fluid_flow_on_edge(), oomph::ImposeFluxForWomersleyElement< DIM >::ImposeFluxForWomersleyElement(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::initial_element_reorder(), oomph::AxisymmetricPoroelasticityEquations::interpolated_div_q(), oomph::DGMesh::limit_slopes(), oomph::Problem::load_balance(), oomph::RefineableTriangleMesh< ELEMENT >::load_balance(), oomph::Multi_domain_functions::locate_zeta_for_local_coordinates(), oomph::Mesh::max_and_min_element_size(), oomph::TriangleMeshCurveSection::maximum_length(), oomph::Mesh::merge_meshes(), oomph::NetFluxControlElement::NetFluxControlElement(), oomph::Mesh::nnon_halo_element(), oomph::NodeOrdering::node_global_position_comparison(), oomph::Mesh::node_update(), oomph::ImmersedRigidBodyElement::node_update_adjacent_fluid_elements(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::oc_hang_helper(), oomph::NonLinearElasticitySmoothMesh< ELEMENT >::operator()(), oomph::LinearElasticitySmoothMesh< LINEAR_ELASTICITY_ELEMENT >::operator()(), oomph::PoissonSmoothMesh< POISSON_ELEMENT >::operator()(), oomph::PeriodicOrbitTemporalMesh< oomph::SpectralPeriodicOrbitElement< NNODE_1D > >::orbit_output(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::orbit_output(), oomph::ClampedHermiteShellBoundaryConditionElement::output(), oomph::Mesh::output(), NonRefineableBinArray::output_bins(), oomph::TriangleMesh< ELEMENT >::output_boundary_coordinates(), oomph::Mesh::output_external_halo_elements(), oomph::Mesh::output_external_haloed_elements(), oomph::Mesh::output_fct(), oomph::NavierStokesEquations< DIM >::output_pressure_advection_diffusion_robin_elements(), oomph::TreeBasedRefineableMeshBase::p_adapt(), oomph::TreeBasedRefineableMeshBase::p_adapt_mesh(), oomph::TreeBasedRefineableMesh< oomph::SpectralPeriodicOrbitElement< NNODE_1D > >::p_refine_elements_if_required(), oomph::TreeBasedRefineableMeshBase::p_refine_selected_elements(), oomph::TreeBasedRefineableMeshBase::p_refine_uniformly(), oomph::TreeBasedRefineableMeshBase::p_unrefine_uniformly(), oomph::Problem::parallel_sparse_assemble(), oomph::METIS::partition_distributed_mesh(), oomph::Problem::partition_global_mesh(), oomph::METIS::partition_mesh(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::PeriodicOrbitAssemblyHandler(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::pin_all(), oomph::FpPressureAdvectionDiffusionProblem< ELEMENT >::pin_all_non_pressure_dofs(), oomph::NavierStokesSchurComplementPreconditioner::pin_all_non_pressure_dofs(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::pin_dofs_of_field(), oomph::RefineablePolarNavierStokesEquations::pin_redundant_nodal_pressures(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::pin_redundant_nodal_pressures(), oomph::RefineableLinearisedAxisymmetricNavierStokesEquations::pin_redundant_nodal_pressures(), oomph::RefineableSphericalNavierStokesEquations::pin_redundant_nodal_pressures(), oomph::RefineableLinearisedNavierStokesEquations::pin_redundant_nodal_pressures(), oomph::RefineableAxisymmetricNavierStokesEquations::pin_redundant_nodal_pressures(), oomph::RefineableGeneralisedNewtonianAxisymmetricNavierStokesEquations::pin_redundant_nodal_pressures(), oomph::RefineableNavierStokesEquations< DIM >::pin_redundant_nodal_pressures(), oomph::PVDEquationsBase< DIM >::pin_redundant_nodal_solid_pressures(), oomph::LinearElasticityEquationsBase< DIM >::pin_redundant_nodal_solid_pressures(), oomph::PitchForkHandler::PitchForkHandler(), oomph::MGSolver< DIM >::plot(), oomph::PMLCornerQuadMesh< ELEMENT >::PMLCornerQuadMesh(), oomph::PMLQuadMesh< ELEMENT >::PMLQuadMesh(), oomph::SegregatableFSIProblem::pointwise_aitken_extrapolate(), oomph::WomersleyImpedanceTubeBase< WOMERSLEY_ELEMENT, DIM >::precompute_aux_integrals(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::project(), oomph::Mesh::prune_halo_elements_and_nodes(), oomph::Problem::prune_halo_elements_and_nodes(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::quad_hang_helper(), oomph::QuarterCircleSectorMesh< ELEMENT >::QuarterCircleSectorMesh(), oomph::QuarterPipeMesh< ELEMENT >::QuarterPipeMesh(), oomph::TriangleMesh< ELEMENT >::re_assign_initial_zeta_values_for_internal_boundary(), oomph::TriangleMesh< ELEMENT >::re_scale_re_assigned_initial_zeta_values_for_internal_boundary(), oomph::Mesh::read(), oomph::Problem::read(), oomph::TriangleHelper::read_triangulateio(), oomph::Problem::recompute_load_balanced_assembly(), VorticitySmoother< ELEMENT >::recover_vorticity(), oomph::RectangleWithHoleMesh< ELEMENT >::RectangleWithHoleMesh(), oomph::TreeBasedRefineableMeshBase::refine_as_in_reference_mesh(), oomph::Problem::refine_distributed_base_mesh(), oomph::TreeBasedRefineableMeshBase::refine_selected_elements(), oomph::TreeBasedRefineableMeshBase::refine_uniformly(), oomph::RefineableEighthSphereMesh< ELEMENT >::RefineableEighthSphereMesh(), oomph::RefineableRectangleWithHoleMesh< ELEMENT >::RefineableRectangleWithHoleMesh(), oomph::RefineableTetgenMesh< ELEMENT >::RefineableTetgenMesh(), oomph::TetMeshBase::region_element_pt(), oomph::UnstructuredTwoDMeshGeometryBase::region_element_pt(), oomph::TriangleMesh< ELEMENT >::remesh_from_internal_triangulateio(), oomph::Problem::remove_duplicate_data(), oomph::HSL_MA42::reorder_elements(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::reposition_spines(), oomph::TriangleMesh< ELEMENT >::reset_boundary_element_info(), oomph::RefineableTriangleMesh< ELEMENT >::reset_halo_haloed_scheme(), oomph::RefineableTriangleMesh< ELEMENT >::reset_halo_haloed_scheme_helper(), oomph::FpPressureAdvectionDiffusionProblem< ELEMENT >::reset_pin_status(), oomph::NavierStokesSchurComplementPreconditioner::reset_pin_status(), oomph::RefineableTriangleMesh< ELEMENT >::reset_shared_boundary_elements_and_nodes(), oomph::AugmentedBlockFoldLinearSolver::resolve(), oomph::AugmentedBlockPitchForkLinearSolver::resolve(), oomph::Mesh::root_halo_element_pt(), oomph::Mesh::root_haloed_element_pt(), oomph::TriangleMesh< ELEMENT >::select_boundary_face_elements(), oomph::FiniteElement::self_test(), oomph::Problem::send_data_to_be_sent_during_load_balancing(), oomph::Problem::send_refinement_info_helper(), oomph::Mesh::set_consistent_pinned_values_for_continuation(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::set_coordinate_for_projection(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::set_current_field_for_projection(), oomph::BiharmonicProblem< DIM >::set_dirichlet_boundary_condition(), oomph::ImmersedRigidBodyElement::set_drag_mesh(), oomph::Mesh::set_elemental_internal_time_stepper(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::set_external_data_from_navier_stokes_outflow_mesh(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::set_lagrangian_coordinate_for_projection(), oomph::BiharmonicProblem< DIM >::set_neumann_boundary_condition(), oomph::Problem::set_pinned_values_to_zero(), oomph::MGSolver< DIM >::set_self_test_vector(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::set_time_level_for_projection(), oomph::AlgebraicFSIDrivenCavityMesh< ELEMENT >::setup_algebraic_node_update(), oomph::AlgebraicCollapsibleChannelMesh< ELEMENT >::setup_algebraic_node_update(), oomph::AlgebraicRefineableQuarterTubeMesh< ELEMENT >::setup_algebraic_node_update(), oomph::Problem::setup_base_mesh_info_after_pruning(), oomph::RefineableLineMesh< oomph::SpectralPeriodicOrbitElement< NNODE_1D > >::setup_binary_tree_forest(), oomph::XdaTetMesh< ELEMENT >::setup_boundary_coordinates(), oomph::TetMeshBase::setup_boundary_coordinates(), oomph::UnstructuredTwoDMeshGeometryBase::setup_boundary_coordinates(), oomph::LineMeshBase::setup_boundary_element_info(), oomph::QuadMeshBase::setup_boundary_element_info(), oomph::TriangleMeshBase::setup_boundary_element_info(), oomph::BrickMeshBase::setup_boundary_element_info(), oomph::HermiteQuadMesh< ELEMENT >::setup_boundary_element_info(), oomph::TetMeshBase::setup_boundary_element_info(), oomph::Multi_domain_functions::setup_bulk_elements_adjacent_to_face_mesh(), oomph::Problem::setup_element_count_per_dof(), oomph::DGMesh::setup_face_neighbour_info(), oomph::FourierDecomposedHelmholtzDtNMesh< ELEMENT >::setup_gamma(), oomph::HelmholtzDtNMesh< ELEMENT >::setup_gamma(), SamplePointContainer::setup_min_and_max_coordinates(), oomph::RefineableBrickMesh< ELEMENT >::setup_octree_forest(), oomph::Z2ErrorEstimator::setup_patches(), VorticitySmoother< ELEMENT >::setup_patches(), oomph::RefineableQuadMesh< ELEMENT >::setup_quadtree_forest(), oomph::Mesh::setup_shared_node_scheme(), oomph::TriangleMesh< ELEMENT >::shared_boundary_element_pt(), oomph::Mesh::shift_time_values(), oomph::RefineableTriangleMesh< ELEMENT >::snap_nodes_onto_boundary(), oomph::TetMeshBase::snap_nodes_onto_geometric_objects(), oomph::TetMeshBase::snap_to_quadratic_surface(), oomph::HSL_MA42::solve(), oomph::AugmentedBlockFoldLinearSolver::solve(), oomph::AugmentedBlockPitchForkLinearSolver::solve(), oomph::BlockHopfLinearSolver::solve(), oomph::HSL_MA42::solve_for_one_dof(), oomph::BlockHopfLinearSolver::solve_for_two_rhs(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_lists(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_maps(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_two_arrays(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_two_vectors(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_vectors_of_pairs(), oomph::TreeBasedRefineableMesh< oomph::SpectralPeriodicOrbitElement< NNODE_1D > >::split_elements_if_required(), oomph::TetMeshBase::split_elements_in_corners(), oomph::LinearisedAxisymmetricNavierStokesEquations::strain_rate(), oomph::SphericalNavierStokesEquations::strain_rate(), oomph::AxisymmetricNavierStokesEquations::strain_rate(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::strain_rate(), oomph::Problem::synchronise_dofs(), oomph::Problem::synchronise_eqn_numbers(), oomph::TreeBasedRefineableMeshBase::synchronise_nonhanging_nodes(), oomph::TriangleMesh< ELEMENT >::synchronize_boundary_coordinates(), oomph::TetgenScaffoldMesh::TetgenScaffoldMesh(), oomph::ThinLayerBrickOnTetMesh< ELEMENT >::ThinLayerBrickOnTetMesh(), oomph::EBDF3::timestep(), oomph::Mesh::total_size(), oomph::ImposeFluxForWomersleyElement< DIM >::total_volume_flux(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::total_volume_flux_into_downstream_tube(), oomph::WomersleyImpedanceTubeBase< WOMERSLEY_ELEMENT, DIM >::total_volume_flux_into_impedance_tube(), oomph::TriangleScaffoldMesh::TriangleScaffoldMesh(), oomph::TrilinosAztecOOSolver::TrilinosAztecOOSolver(), oomph::RefineableTriangleMesh< ELEMENT >::try_to_add_element_pt_load_balance(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::unpin_all(), oomph::RefineablePolarNavierStokesEquations::unpin_all_pressure_dofs(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::unpin_all_pressure_dofs(), oomph::RefineableLinearisedAxisymmetricNavierStokesEquations::unpin_all_pressure_dofs(), oomph::RefineableSphericalNavierStokesEquations::unpin_all_pressure_dofs(), oomph::RefineableLinearisedNavierStokesEquations::unpin_all_pressure_dofs(), oomph::RefineableAxisymmetricNavierStokesEquations::unpin_all_pressure_dofs(), oomph::RefineableGeneralisedNewtonianAxisymmetricNavierStokesEquations::unpin_all_pressure_dofs(), oomph::RefineableNavierStokesEquations< DIM >::unpin_all_pressure_dofs(), oomph::PVDEquationsBase< DIM >::unpin_all_solid_pressure_dofs(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::unpin_dofs_of_field(), oomph::RefineableTriangleMesh< ELEMENT >::unrefine_boundary(), oomph::RefineableTriangleMesh< ELEMENT >::unrefine_boundary_constrained_by_target_area(), oomph::TreeBasedRefineableMeshBase::unrefine_uniformly(), oomph::TriangleMesh< ELEMENT >::update_holes_information_helper(), oomph::RefineableTriangleMesh< ELEMENT >::update_open_curve_using_face_mesh(), oomph::RefineableTriangleMesh< ELEMENT >::update_polygon_using_face_mesh(), oomph::RefineableTriangleMesh< ELEMENT >::update_shared_curve_after_restart(), oomph::RefineableTriangleMesh< ELEMENT >::update_shared_curve_using_elements_area(), oomph::FpPressureAdvectionDiffusionProblem< ELEMENT >::validate(), oomph::WomersleyImpedanceTubeBase< WOMERSLEY_ELEMENT, DIM >::WomersleyImpedanceTubeBase(), oomph::WomersleyMesh< WOMERSLEY_ELEMENT >::WomersleyMesh(), oomph::WomersleyProblem< WOMERSLEY_ELEMENT, DIM >::WomersleyProblem(), and oomph::XdaTetMesh< ELEMENT >::XdaTetMesh().

elem_len

unsigned elem_len

Definition at line 538 of file cfortran.h.

Referenced by for(), and if().

fstr

static char sizeofcstr char * fstr = sizeofcstr - sizeofcstr/elem_len

Definition at line 538 of file cfortran.h.

Referenced by for().

i

cstr elem_len* i

Definition at line 607 of file cfortran.h.

Referenced by oomph::IMRByBDF::actions_after_timestep(), oomph::NonLinearElasticitySmoothMesh< ELEMENT >::actions_before_newton_solve(), oomph::IMRByBDF::actions_before_timestep(), oomph::YoungLaplaceContactAngleElement< ELEMENT >::actual_cos_contact_angle(), oomph::RefineableTetgenMesh< ELEMENT >::adapt(), oomph::RefineableGmshTetMesh< ELEMENT >::adapt(), oomph::RefineableTriangleMesh< ELEMENT >::adapt(), oomph::Problem::adapt(), oomph::TreeBasedRefineableMeshBase::adapt_mesh(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::adapt_temporal_mesh(), oomph::Problem::adaptive_unsteady_newton_solve(), oomph::CRDoubleMatrix::add(), oomph::SurfactantTransportInterfaceElement::add_additional_residual_contributions_interface(), oomph::ElasticUpdateFluidInterfaceElement< FluidInterfaceElement, LineDerivatives, ELEMENT >::add_additional_residual_contributions_interface(), oomph::TriangleMeshCurviLine::add_connection_point(), oomph::Data::add_copy(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::add_element_contribution_to_aux_integral(), oomph::Data::add_eqn_numbers_to_vector(), oomph::GeneralisedElement::add_external_data(), oomph::DGFaceElement::add_flux_contributions(), oomph::GeneralisedElement::add_global_eqn_numbers(), oomph::GeneralisedElement::add_internal_data(), oomph::GeneralisedElement::add_internal_data_values_to_vector(), oomph::GeneralisedElement::add_internal_eqn_numbers_to_vector(), oomph::GeneralisedElement::add_internal_value_pt_to_map(), oomph::HangInfo::add_master_node_pt(), oomph::TriangleMeshParameters::add_region_coordinates(), oomph::Data::add_value_pt_to_map(), oomph::Data::add_values_to_vector(), oomph::Node::add_values_to_vector(), oomph::SolidNode::add_values_to_vector(), oomph::RefineableTriangleMesh< ELEMENT >::add_vertices_for_non_deletion(), oomph::SumOfMatrices::added_matrix_pt(), oomph::TreeBasedRefineableMesh< oomph::SpectralPeriodicOrbitElement< NNODE_1D > >::additional_synchronise_hanging_nodes(), oomph::YoungLaplaceEquations::allocate_vector_of_vectors(), oomph::AnnularDomain::AnnularDomain(), oomph::ProblemBasedShiftInvertOperator::apply(), oomph::RefineableTriangleMesh< ELEMENT >::apply_max_length_constraint(), oomph::FSI_functions::apply_no_slip_on_moving_wall(), oomph::OomphLibPreconditionerEpetraOperator::ApplyInverse(), oomph::Problem::arc_length_step_solve(), oomph::Problem::arc_length_step_solve_helper(), oomph::RefineableElement::assemble_eulerian_base_vectors(), oomph::FiniteElement::assemble_eulerian_base_vectors(), oomph::NavierStokesSchurComplementPreconditioner::assemble_inv_press_and_veloc_mass_matrix_diagonal(), oomph::RefineableElement::assemble_local_to_eulerian_jacobian(), oomph::FiniteElement::assemble_local_to_eulerian_jacobian(), oomph::RefineableElement::assemble_local_to_eulerian_jacobian2(), oomph::FiniteElement::assemble_local_to_eulerian_jacobian2(), oomph::RefineableSolidElement::assemble_local_to_lagrangian_jacobian(), oomph::SolidFiniteElement::assemble_local_to_lagrangian_jacobian(), oomph::RefineableSolidElement::assemble_local_to_lagrangian_jacobian2(), oomph::SolidFiniteElement::assemble_local_to_lagrangian_jacobian2(), oomph::PressureBasedSolidLSCPreconditioner::assemble_mass_matrix_diagonal(), oomph::ElementWithMovingNodes::assemble_set_of_all_geometric_data(), oomph::AssemblyHandler::AssemblyHandler(), oomph::TetMeshBase::assess_mesh_quality(), oomph::ElementWithMovingNodes::assign_all_generic_local_eqn_numbers(), oomph::Data::assign_eqn_numbers(), oomph::Node::assign_eqn_numbers(), oomph::Problem::assign_eqn_numbers(), oomph::ElementWithExternalElement::assign_external_interaction_data_local_eqn_numbers(), oomph::Mesh::assign_global_eqn_numbers(), oomph::SpineMesh::assign_global_spine_eqn_numbers(), oomph::Newmark< NSTEPS >::assign_initial_data_values(), oomph::Steady< 0 >::assign_initial_positions_impulsive(), oomph::Newmark< NSTEPS >::assign_initial_positions_impulsive(), oomph::BDF< NSTEPS >::assign_initial_positions_impulsive(), oomph::GeneralisedElement::assign_internal_and_external_local_eqn_numbers(), oomph::GeneralisedElement::assign_internal_eqn_numbers(), oomph::Mesh::assign_local_eqn_numbers(), oomph::Hijacked< SpineElement< FaceGeometry< ELEMENT > > >::assign_local_eqn_numbers(), oomph::GeneralisedElement::assign_local_eqn_numbers(), oomph::FiniteElement::assign_nodal_local_eqn_numbers(), oomph::OneDLagrangianMesh< ELEMENT >::assign_undeformed_positions(), oomph::CircularCylindricalShellMesh< ELEMENT >::assign_undeformed_positions(), oomph::Multi_domain_functions::aux_setup_multi_domain_interaction(), oomph::EulerEquations< DIM >::average_prim_value(), oomph::DGElement::average_value(), oomph::AxisymmetricLinearElasticityTractionElement< ELEMENT >::AxisymmetricLinearElasticityTractionElement(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::AxisymmetricNavierStokesTractionElement(), oomph::DenseLU::backsub(), oomph::SuperLUSolver::backsub_serial(), oomph::NonLinearElasticitySmoothMesh< ELEMENT >::backup(), oomph::SolidICProblem::backup_original_state(), oomph::BackupMeshForProjection< GEOMETRIC_ELEMENT >::BackupMeshForProjection(), oomph::BellElementBase< NNODE_1D >::basis_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::basis_at_knot_curve(), oomph::C1CurvedElementBase< NNODE_1D >::basis_at_knot_straight(), oomph::BellElementBase< NNODE_1D >::basis_c0_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::basis_c0_at_knot(), RefineableBinArray::bin_pt(), oomph::BinaryTreeForest::binary_neigh_pt(), oomph::BinaryTreeForest::binary_tree_pt(), oomph::BlackBoxFDNewtonSolver::black_box_fd_newton_solve(), oomph::BlockPreconditioner< CRDoubleMatrix >::block_matrix_test(), oomph::HelmholtzMGPreconditioner< DIM >::block_preconditioner_self_test(), oomph::BlockPreconditioner< CRDoubleMatrix >::block_setup(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::body_force(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquationsBase::body_force(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM, PML_ELEMENT >::body_force(), oomph::LinearElasticityEquationsBase< DIM >::body_force(), oomph::PVDEquationsBase< DIM >::body_force(), oomph::AxisymmetricLinearElasticityEquationsBase::body_force(), oomph::Mesh::boundary_coordinate_exists(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::BrethertonSpineMesh(), oomph::RefineableQElement< 3 >::build(), oomph::RefineableQElement< 2 >::build(), oomph::AddedMainNumberingLookup::build(), oomph::DoubleMultiVector::build(), oomph::RefineableSolidQElement< 2 >::build(), oomph::RefineableSolidQElement< 3 >::build(), oomph::CRMatrix< std::complex< double > >::build(), oomph::CCMatrix< std::complex< double > >::build(), oomph::ChannelSpineMesh< ELEMENT >::build_channel_spine_mesh(), oomph::QSpectralElement< 2, NNODE_1D >::build_face_element(), oomph::QHermiteElement< DIM-1 >::build_face_element(), oomph::QSpectralElement< 3, NNODE_1D >::build_face_element(), oomph::TElement< 2, NNODE_1D >::build_face_element(), oomph::FiniteElement::build_face_element(), oomph::TElement< 3, NNODE_1D >::build_face_element(), oomph::SimpleCubicTetMesh< ELEMENT >::build_from_scaffold(), oomph::TetgenMesh< ELEMENT >::build_from_scaffold(), oomph::TriangleMesh< ELEMENT >::build_from_scaffold(), oomph::GmshTetMesh< ELEMENT >::build_from_scaffold(), oomph::HorizontalSingleLayerSpineMesh< ELEMENT >::build_horizontal_single_layer_mesh(), oomph::MeshAsGeomObject::build_it(), oomph::GmshTetMesh< ELEMENT >::build_it(), oomph::BackwardStepQuadMesh< ELEMENT >::build_mesh(), oomph::RectangularQuadMesh< ELEMENT >::build_mesh(), oomph::FishMesh< ELEMENT >::build_mesh(), oomph::SimpleCubicMesh< ELEMENT >::build_mesh(), oomph::BrickFromTetMesh< ELEMENT >::build_mesh(), oomph::CircularCylindricalShellMesh< ELEMENT >::build_mesh(), oomph::HermiteQuadMesh< ELEMENT >::build_mesh(), oomph::SingleLayerCubicSpineMesh< ELEMENT >::build_single_layer_mesh(), oomph::SingleLayerSpineMesh< ELEMENT >::build_single_layer_mesh(), oomph::TetgenMesh< ELEMENT >::build_tetgenio(), oomph::TriangleMesh< ELEMENT >::build_triangulateio(), oomph::UnstructuredTwoDMeshGeometryBase::build_triangulateio(), oomph::TwoLayerSpineMesh< ELEMENT >::build_two_layer_mesh(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::bulk_element_pt(), oomph::FaceElement::bulk_position_type(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::c_index_adv_diff_react(), oomph::ConstitutiveLaw::calculate_d_second_piola_kirchhoff_stress_dG(), oomph::FluxTransportEquations< DIM >::calculate_element_averages(), VorticityRecoveryHelpers::RecoveryHelper::calculate_number_of_values_per_field(), oomph::BDF< NSTEPS >::calculate_predicted_positions(), oomph::TR::calculate_predicted_positions(), oomph::BDF< NSTEPS >::calculate_predicted_values(), oomph::TR::calculate_predicted_values(), oomph::Problem::calculate_predictions(), oomph::GeneralisedHookean::calculate_second_piola_kirchhoff_stress(), oomph::IsotropicStrainEnergyFunctionConstitutiveLaw::calculate_second_piola_kirchhoff_stress(), oomph::CCMatrix< std::complex< double > >::CCMatrix(), oomph::ChannelSpineMesh< ELEMENT >::centre_element_pt(), oomph::ImmersedRigidBodyElement::centre_of_gravity(), oomph::NavierStokesSurfaceDragTorqueElement< ELEMENT >::centre_of_rotation(), oomph::ChannelSpineMesh< ELEMENT >::centre_spine_pt(), oomph::Hankel_functions_for_helmholtz_problem::CHankel_first(), oomph::ChannelWithLeafletDomain::ChannelWithLeafletDomain(), oomph::ChannelWithLeafletMesh< ELEMENT >::ChannelWithLeafletMesh(), oomph::TriangleMesh< ELEMENT >::check_connections_of_polyline_nodes(), oomph::Mesh::check_for_repeated_nodes(), oomph::Mesh::check_halo_schemes(), oomph::RefineableQElement< 3 >::check_integrity(), oomph::RefineableQElement< 2 >::check_integrity(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::check_integrity(), oomph::Mesh::check_inverted_elements(), oomph::FaceElement::check_J_eulerian_at_knots(), oomph::FiniteElement::check_jacobian(), oomph::C1CurvedElement< 2, NNODE_1D >::classify_boundary_node(), oomph::HelmholtzMGPreconditioner< DIM >::clean_up_memory(), oomph::MGSolver< DIM >::clean_up_memory(), oomph::PreconditionerArray::clean_up_memory(), oomph::PseudoElasticPreconditioner::clean_up_memory(), oomph::InexactSubBiharmonicPreconditioner::clean_up_memory(), oomph::CRComplexMatrix::clean_up_memory(), oomph::PseudoElasticPreconditionerOld::clean_up_memory(), oomph::BlockTriangularPreconditioner< MATRIX >::clean_up_memory(), oomph::CCComplexMatrix::clean_up_memory(), oomph::SuperLUSolver::clean_up_memory(), oomph::PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld::clean_up_memory(), oomph::BlockPreconditioner< CRDoubleMatrix >::clear_block_preconditioner_base(), oomph::BoundaryNode< NODE_TYPE >::clear_copied_pointers(), oomph::SumOfMatrices::col_map_pt(), oomph::CollapsibleChannelDomain::CollapsibleChannelDomain(), oomph::CollapsibleChannelMesh< ELEMENT >::CollapsibleChannelMesh(), oomph::TreeBasedRefineableMeshBase::complete_hanging_nodes(), oomph::SpineElement< FaceGeometry< ELEMENT > >::complete_setup_of_dependencies(), oomph::ComplexDampedJacobi< MATRIX >::complex_smoother_setup(), oomph::ComplexDampedJacobi< MATRIX >::complex_solve_helper(), oomph::ComplexGMRES< MATRIX >::complex_solve_helper(), oomph::TriangleMesh< ELEMENT >::compute_boundary_segments_connectivity_and_initial_zeta_values(), oomph::HelmholtzBCElementBase< ELEMENT >::compute_contribution_to_fourier_components(), oomph::PRefineableQLinearElasticityElement< DIM >::compute_energy_error(), oomph::PRefineableQPoissonElement< DIM >::compute_energy_error(), oomph::ScalarAdvectionEquations< DIM >::compute_error(), oomph::EulerEquations< DIM >::compute_error(), oomph::YoungLaplaceEquations::compute_error(), oomph::SteadyAxisymAdvectionDiffusionEquations::compute_error(), oomph::SphericalAdvectionDiffusionEquations::compute_error(), oomph::DisplacementBasedFoepplvonKarmanEquations::compute_error(), oomph::LinearWaveEquations< DIM >::compute_error(), oomph::FoepplvonKarmanEquations::compute_error(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::compute_error(), oomph::UnsteadyHeatEquations< DIM >::compute_error(), oomph::FourierDecomposedHelmholtzEquations::compute_error(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::compute_error(), oomph::PMLFourierDecomposedHelmholtzEquationsBase::compute_error(), oomph::HelmholtzEquations< DIM >::compute_error(), oomph::PoissonEquations< DIM >::compute_error(), oomph::AxisymAdvectionDiffusionEquations::compute_error(), oomph::AdvectionDiffusionEquations< DIM >::compute_error(), oomph::BiharmonicEquations< DIM >::compute_error(), oomph::WomersleyEquations< DIM >::compute_error(), oomph::PMLHelmholtzEquationsBase< DIM >::compute_error(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::compute_error(), oomph::LinearElasticityEquations< DIM >::compute_error(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::compute_error(), oomph::DarcyEquations< 2 >::compute_error(), oomph::PolarNavierStokesEquations::compute_error(), oomph::AxisymmetricLinearElasticityEquations::compute_error(), oomph::SphericalNavierStokesEquations::compute_error(), oomph::PoroelasticityEquations< 2 >::compute_error(), oomph::AxisymmetricNavierStokesEquations::compute_error(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::compute_error(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::compute_error(), oomph::NavierStokesEquations< DIM >::compute_error(), oomph::Mesh::compute_error(), oomph::AxisymmetricPoroelasticityEquations::compute_error(), oomph::SphericalNavierStokesEquations::compute_error_e(), oomph::RefineablePoissonEquations< DIM >::compute_exact_Z2_error(), oomph::HelmholtzDtNMesh< ELEMENT >::compute_fourier_components(), oomph::FourierDecomposedHelmholtzDtNBoundaryElement< ELEMENT >::compute_gamma_contribution(), oomph::HelmholtzDtNBoundaryElement< ELEMENT >::compute_gamma_contribution(), oomph::RefineableTriangleMesh< ELEMENT >::compute_global_node_names_and_shared_nodes(), oomph::TriangleMesh< ELEMENT >::compute_holes_left_by_halo_elements_helper(), oomph::InexactSubBiharmonicPreconditioner::compute_inexact_schur_complement(), oomph::UnsteadyHeatEquations< DIM >::compute_norm(), oomph::FourierDecomposedHelmholtzEquations::compute_norm(), oomph::PMLFourierDecomposedHelmholtzEquationsBase::compute_norm(), oomph::PoissonEquations< DIM >::compute_norm(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::compute_norm(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::compute_norm(), oomph::PMLHelmholtzEquationsBase< DIM >::compute_norm(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::compute_norm(), oomph::NavierStokesEquations< DIM >::compute_norm(), oomph::SolidFiniteElement::compute_norm(), oomph::AxisymmetricPVDEquations::compute_physical_size(), oomph::AxisymmetricPVDEquationsWithPressure::compute_physical_size(), oomph::AxisymmetricNavierStokesEquations::compute_physical_size(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::compute_physical_size(), oomph::RefineableTriangleMesh< ELEMENT >::compute_shared_node_degree_helper(), oomph::SphericalNavierStokesEquations::compute_shear_stress(), oomph::QSUPGAdvectionDiffusionElement< DIM, NNODE_1D >::compute_stabilisation_parameter(), oomph::LineDerivatives::compute_surface_derivatives(), oomph::AxisymmetricDerivatives::compute_surface_derivatives(), oomph::SurfaceDerivatives::compute_surface_derivatives(), oomph::RefineableTetMeshBase::compute_volume_target(), oomph::DoubleVectorHelpers::concatenate(), oomph::DoubleVectorHelpers::concatenate_without_communication(), oomph::CRDoubleMatrixHelpers::concatenate_without_communication(), oomph::Data::constrain_all(), oomph::Missing_masters_functions::construct_new_external_halo_master_node_helper(), oomph::Multi_domain_functions::construct_new_external_halo_master_node_helper(), oomph::Missing_masters_functions::construct_new_external_halo_node_helper(), oomph::Multi_domain_functions::construct_new_external_halo_node_helper(), oomph::RefineableTriangleMesh< ELEMENT >::construct_new_halo_node_helper(), oomph::RefineableTriangleMesh< ELEMENT >::construct_new_node_load_balance_helper(), oomph::QuadTreeForest::construct_north_equivalents(), oomph::OcTree::construct_rotation_matrix(), oomph::OcTreeForest::construct_up_right_equivalents(), oomph::YoungLaplaceContactAngleElement< ELEMENT >::contact_line_vectors(), oomph::FaceElement::continuous_tangent_and_outer_unit_normal(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::contribution_to_enclosed_volume(), oomph::LineVolumeConstraintBoundingElement::contribution_to_enclosed_volume(), oomph::AxisymmetricVolumeConstraintBoundingElement::contribution_to_enclosed_volume(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::contribution_to_total_porous_flux(), oomph::AxisymmetricPoroelasticityTractionElement< POROELASTICITY_BULK_ELEMENT >::contribution_to_total_porous_flux(), oomph::AxisymmetricVolumeConstraintBoundingElement::contribution_to_volume_flux(), oomph::TriangleMesh< ELEMENT >::convex_hull(), oomph::Problem::copy(), oomph::LinearisedQCrouzeixRaviartElement::copy_efunction_to_normalisation(), oomph::BackupMeshForProjection< GEOMETRIC_ELEMENT >::copy_onto_original_mesh(), oomph::TrilinosEpetraHelpers::copy_to_oomphlib_vector(), oomph::RefineableTriangleMesh< ELEMENT >::create_adjacency_matrix_new_shared_edges_helper(), oomph::VorticitySmootherElement< ELEMENT >::create_container_for_vorticity_and_derivatives(), oomph::TriangleMesh< ELEMENT >::create_distributed_domain_representation(), oomph::TrilinosEpetraHelpers::create_epetra_map(), oomph::Multi_domain_functions::create_external_halo_elements(), oomph::HypreHelpers::create_HYPRE_Matrix(), oomph::HypreHelpers::create_HYPRE_Vector(), oomph::GmshTetScaffoldMesh::create_mesh_from_msh_file(), oomph::RefineableTriangleMesh< ELEMENT >::create_new_shared_boundaries(), oomph::UnstructuredTwoDMeshGeometryBase::create_open_curve_with_polyline_helper(), oomph::TriangleMesh< ELEMENT >::create_polylines_from_halo_elements_helper(), oomph::RefineableTriangleMesh< ELEMENT >::create_polylines_from_polyfiles(), oomph::TriangleMesh< ELEMENT >::create_shared_polyline(), oomph::TriangleMesh< ELEMENT >::create_shared_polylines_connections(), oomph::RefineableTriangleMesh< ELEMENT >::create_temporary_boundary_connections(), oomph::TriangleMesh< ELEMENT >::create_tmp_open_curves_helper(), oomph::TriangleMesh< ELEMENT >::create_tmp_polygons_helper(), oomph::TriangleHelper::create_triangulateio_from_polyfiles(), oomph::UnstructuredTwoDMeshGeometryBase::create_vertex_coordinates_for_polyline_connections(), oomph::UnstructuredTwoDMeshGeometryBase::create_vertex_coordinates_for_polyline_no_connections(), oomph::CRMatrix< std::complex< double > >::CRMatrix(), oomph::C1CurvedElementShape< 2, NNODE_1D >::Cshape(), oomph::TriangleMeshCurve::curve_section_pt(), oomph::CylinderWithFlagDomain::CylinderWithFlagDomain(), oomph::BellElementBase< NNODE_1D >::d2basis_c0_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::d2basis_c0_local_at_knot(), oomph::BellElementBase< NNODE_1D >::d2basis_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::d2basis_local_at_knot_curve(), oomph::C1CurvedElementBase< NNODE_1D >::d2basis_local_at_knot_straight(), oomph::C1CurvedElementShape< 2, NNODE_1D >::d2Cshape_local(), oomph::LinearTElement< 2 >::d2Lshape_local(), oomph::GeometricTElement< 2 >::d2Lshape_local(), oomph::TElementShape< 2, 2 >::d2shape_local(), oomph::QElement< 2, NNODE_1D >::d2shape_local(), oomph::QElement< 3, NNODE_1D >::d2shape_local(), oomph::TElementShape< 3, 2 >::d2shape_local(), oomph::FiniteElement::d2shape_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::d2shape_local_at_knot_geom(), oomph::BellElementBase< NNODE_1D >::d2test_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::d2test_local_at_knot(), oomph::FiniteElement::d_dshape_eulerian_dnodal_coordinates_templated_helper(), oomph::SphericalNavierStokesEquations::d_kin_energy_dt(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::d_kin_energy_dt(), oomph::NavierStokesEquations< DIM >::d_kin_energy_dt(), oomph::FourierDecomposedHelmholtzBCElementBase< ELEMENT >::d_shape_and_test_local(), oomph::HelmholtzBCElementBase< ELEMENT >::d_shape_and_test_local(), oomph::PMLFourierDecomposedHelmholtzPowerMonitorElement< ELEMENT >::d_shape_and_test_local(), oomph::Data::Data(), oomph::ProjectableDarcyElement< DARCY_ELEMENT >::data_values_of_field(), oomph::ProjectableAxisymmetricPoroelasticityElement< AXISYMMETRIC_POROELASTICITY_ELEMENT >::data_values_of_field(), oomph::BellElementBase< NNODE_1D >::dbasis_c0_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::dbasis_c0_local_at_knot(), oomph::BellElementBase< NNODE_1D >::dbasis_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::dbasis_local_at_knot_curve(), oomph::C1CurvedElementBase< NNODE_1D >::dbasis_local_at_knot_straight(), oomph::C1CurvedElementShape< 2, NNODE_1D >::dCshape_local(), oomph::Orthpoly::ddlegendre(), oomph::Mesh::delete_all_external_storage(), oomph::AxisAlignedPMLElement< DIM >::delta(), oomph::DenseComplexMatrix::DenseComplexMatrix(), oomph::DenseMatrix< bool >::DenseMatrix(), oomph::StrainEnergyFunction::derivatives(), oomph::Mesh::describe_dofs(), oomph::Data::describe_dofs(), oomph::GeneralisedElement::describe_dofs(), oomph::Problem::describe_dofs(), oomph::ElementWithMovingNodes::describe_local_dofs(), oomph::Mesh::describe_local_dofs(), oomph::FSIWallElement::describe_local_dofs(), oomph::ElementWithExternalElement::describe_local_dofs(), oomph::GeneralisedElement::describe_local_dofs(), oomph::SpineMesh::describe_spine_dofs(), oomph::ScalarAdvectionEquations< DIM >::dflux_du(), oomph::CRDoubleMatrix::diagonal_entries(), oomph::DiagonalComplexMatrix::DiagonalComplexMatrix(), BinArray::dimension_of_bin_array(), BinArray::dimensions_of_bin_array(), oomph::TriangleMeshCurve::disable_polyline_refinement(), oomph::TriangleMeshCurve::disable_polyline_unrefinement(), oomph::HelmholtzMGPreconditioner< DIM >::disable_smoother_and_superlu_doc_time(), oomph::MGSolver< DIM >::disable_smoother_and_superlu_doc_time(), oomph::PolarNavierStokesEquations::dissipation(), oomph::SphericalNavierStokesEquations::dissipation(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::dissipation(), oomph::AxisymmetricNavierStokesEquations::dissipation(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::dissipation(), oomph::NavierStokesEquations< DIM >::dissipation(), oomph::Mesh::distribute(), oomph::Problem::distribute(), oomph::GeometricTElement< 2 >::dLshape_local(), oomph::SolidHelpers::doc_2D_principal_stress(), oomph::Mesh::doc_boundary_coordinates(), oomph::OcTree::doc_face_neighbours(), oomph::Z2ErrorEstimator::doc_flux(), oomph::FSI_functions::doc_fsi(), oomph::Mesh::doc_mesh_distribution(), oomph::BinaryTree::doc_neighbours(), oomph::QuadTree::doc_neighbours(), oomph::Mesh::doc_shared_nodes(), oomph::BiharmonicFluidProblem< DIM >::doc_solution(), oomph::OcTree::doc_true_edge_neighbours(), oomph::BlockPreconditioner< CRDoubleMatrix >::document(), oomph::Problem::does_pointer_correspond_to_problem_data(), oomph::SpineMesh::does_pointer_correspond_to_spine_data(), oomph::Data::does_pointer_correspond_to_value(), oomph::Problem::dof(), oomph::Problem::dof_current(), oomph::Problem::dof_derivative(), oomph::Problem::dof_pt(), oomph::GeneralisedElement::dof_pt_vector(), oomph::GeneralisedElement::dof_vector(), oomph::VectorHelpers::dot(), oomph::DoubleVector::dot(), oomph::DoubleMultiVector::dot(), oomph::DoubleMultiVector::DoubleMultiVector(), oomph::DoubleMultiVector::doublevector(), oomph::DoubleVectorHaloScheme::DoubleVectorHaloScheme(), oomph::FSIHermiteBeamElement::dposition_dlagrangian_at_local_coordinate(), oomph::FSIDiagHermiteShellElement::dposition_dlagrangian_at_local_coordinate(), oomph::ImmersedRigidBodyElement::dposition_dt(), oomph::GeomObject::dposition_dt(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::dpshape_and_dptest_eulerian_nst(), oomph::QTaylorHoodElement< DIM >::dpshape_and_dptest_eulerian_nst(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::drag_force(), oomph::QSUPGAdvectionDiffusionElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_adv_diff(), oomph::QSteadyAxisymAdvectionDiffusionElement< NNODE_1D >::dshape_and_dtest_eulerian_adv_diff(), oomph::QAdvectionDiffusionElement< DIM, 3 >::dshape_and_dtest_eulerian_adv_diff(), oomph::QAdvectionDiffusionReactionElement< NREAGENT, DIM, NNODE_1D >::dshape_and_dtest_eulerian_adv_diff_react(), oomph::QSUPGAdvectionDiffusionElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_at_knot_adv_diff(), oomph::AxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_at_knot_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_at_knot_axi_nst(), oomph::AxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_at_knot_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_at_knot_axi_nst(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_at_knot_linearised_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_at_knot_linearised_axi_nst(), oomph::TCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::GeneralisedNewtonianTCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::TTaylorHoodElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::GeneralisedNewtonianTTaylorHoodElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::GeneralisedNewtonianQCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::PRefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::QCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::PRefineableQCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::QTaylorHoodElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::PolarCrouzeixRaviartElement::dshape_and_dtest_eulerian_at_knot_pnst(), oomph::PolarTaylorHoodElement::dshape_and_dtest_eulerian_at_knot_pnst(), oomph::QSphericalCrouzeixRaviartElement::dshape_and_dtest_eulerian_at_knot_spherical_nst(), oomph::QSphericalTaylorHoodElement::dshape_and_dtest_eulerian_at_knot_spherical_nst(), oomph::QAxisymAdvectionDiffusionElement< NNODE_1D >::dshape_and_dtest_eulerian_axi_adv_diff(), oomph::AxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_axi_nst(), oomph::AxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_axi_nst(), oomph::QGeneralisedAdvectionDiffusionElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_cons_adv_diff(), QGeneralisedAxisymAdvectionDiffusionElement< NNODE_1D >::dshape_and_dtest_eulerian_cons_axisym_adv_diff(), oomph::QSpectralScalarAdvectionElement< 2, NNODE_1D >::dshape_and_dtest_eulerian_flux_transport(), oomph::QSpectralEulerElement< 2, NNODE_1D >::dshape_and_dtest_eulerian_flux_transport(), oomph::QScalarAdvectionElement< 2, NNODE_1D >::dshape_and_dtest_eulerian_flux_transport(), oomph::TFourierDecomposedHelmholtzElement< NNODE_1D >::dshape_and_dtest_eulerian_fourier_decomposed_helmholtz(), oomph::TFoepplvonKarmanElement< NNODE_1D >::dshape_and_dtest_eulerian_fvk(), oomph::TDisplacementBasedFoepplvonKarmanElement< NNODE_1D >::dshape_and_dtest_eulerian_fvk(), oomph::THelmholtzElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_helmholtz(), oomph::TPMLHelmholtzElement< DIM, NNODE_1D, PML_ELEMENT >::dshape_and_dtest_eulerian_helmholtz(), oomph::QLinearWaveElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_lin_wave(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_linearised_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_linearised_axi_nst(), oomph::PRefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_nst(), oomph::PRefineableQCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_nst(), oomph::TPMLFourierDecomposedHelmholtzElement< NNODE_1D, PML_ELEMENT >::dshape_and_dtest_eulerian_pml_fourier_decomposed_helmholtz(), oomph::PolarCrouzeixRaviartElement::dshape_and_dtest_eulerian_pnst(), oomph::PolarTaylorHoodElement::dshape_and_dtest_eulerian_pnst(), oomph::QSpectralPoissonElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_poisson(), oomph::TPoissonElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_poisson(), oomph::QSphericalAdvectionDiffusionElement< NNODE_1D >::dshape_and_dtest_eulerian_spherical_adv_diff(), oomph::QSphericalCrouzeixRaviartElement::dshape_and_dtest_eulerian_spherical_nst(), oomph::QSphericalTaylorHoodElement::dshape_and_dtest_eulerian_spherical_nst(), oomph::TUnsteadyHeatElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_ust_heat(), oomph::QUnsteadyHeatElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_ust_heat(), oomph::TWomersleyElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_womersley(), oomph::QWomersleyElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_womersley(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::dshape_local(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::dshape_local(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::dshape_local(), oomph::ClampedHermiteShellBoundaryConditionElement::dshape_local(), oomph::QSpectralElement< 2, NNODE_1D >::dshape_local(), oomph::QElement< 2, NNODE_1D >::dshape_local(), oomph::QSpectralElement< 3, NNODE_1D >::dshape_local(), oomph::QElement< 3, NNODE_1D >::dshape_local(), oomph::FiniteElement::dshape_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::dshape_local_at_knot_geom(), oomph::BellElementBase< NNODE_1D >::dtest_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::dtest_local_at_knot(), oomph::DummyErrorEstimator::DummyErrorEstimator(), oomph::Mesh::dump(), oomph::Problem::dump(), oomph::TreeBasedRefineableMeshBase::dump_refinement(), oomph::TriangleHelper::dump_triangulateio(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::E(), oomph::LinearElasticityEquationsBase< DIM >::E(), oomph::PoroelasticityEquations< 2 >::E(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM, PML_ELEMENT >::E(), oomph::TetgenScaffoldMesh::edge_boundary(), oomph::TriangleScaffoldMesh::edge_boundary(), oomph::TetgenScaffoldMesh::edge_index(), oomph::TriangleScaffoldMesh::edge_index(), oomph::DenseDoubleMatrix::eigenvalues_by_jacobi(), oomph::EighthSphereDomain::EighthSphereDomain(), oomph::EighthSphereMesh< ELEMENT >::EighthSphereMesh(), oomph::ElasticUpdateFluidInterfaceElement< FluidInterfaceElement, LineDerivatives, ELEMENT >::ElasticUpdateFluidInterfaceElement(), oomph::ChannelSpineMesh< ELEMENT >::element_reorder(), oomph::RectangularQuadMesh< ELEMENT >::element_reorder(), oomph::Mesh::elemental_dimension(), oomph::LinearisedAxisymmetricNavierStokesEquations::enable_ALE(), oomph::LinearisedNavierStokesEquations::enable_ALE(), oomph::TriangleMeshCurve::enable_polyline_refinement(), oomph::TriangleMeshCurve::enable_polyline_unrefinement(), oomph::CRDoubleMatrix::entries_are_sorted(), oomph::MapMatrixMixed< unsigned, unsigned, oomph::CRDoubleMatrix * >::entry_pt(), oomph::Data::eqn_number(), oomph::Data::eqn_number_pt(), oomph::GeneralisedElement::exclude_external_data_fd(), oomph::GeneralisedElement::exclude_internal_data_fd(), oomph::PVDEquations< DIM >::extended_output(), oomph::PVDEquationsWithPressure< DIM >::extended_output(), oomph::GeneralisedElement::external_data_fd(), oomph::GeneralisedElement::external_data_pt(), oomph::ElementWithExternalElement::external_interaction_field_data_pt(), oomph::ElementWithExternalElement::external_interaction_geometric_data_pt(), oomph::GeneralisedElement::external_local_eqn(), oomph::DampedJacobi< MATRIX >::extract_diagonal_entries(), oomph::SphericalNavierStokesEquations::extract_velocity(), oomph::SegregatableFSIProblem::extrapolate_solid_data(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::extrapolated_strain_rate(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::extrapolated_strain_rate(), oomph::TetgenScaffoldMesh::face_boundary(), oomph::DGElement::face_element_pt(), oomph::TetgenScaffoldMesh::face_index(), oomph::DenseLU::factorise(), oomph::SuperLUSolver::factorise_distributed(), oomph::SuperLUSolver::factorise_serial(), RefineableBinArray::fill_bin_array(), NonRefineableBinArray::fill_bin_array(), NonRefineableBinArray::fill_bin_by_diffusion(), oomph::RefineableTriangleMesh< ELEMENT >::fill_boundary_elements_and_nodes_for_internal_boundaries(), oomph::AxisymmetricNavierStokesEquations::fill_in_contribution_to_hessian_vector_products(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_contribution_to_hessian_vector_products(), oomph::ODEElement::fill_in_contribution_to_jacobian(), oomph::DisplacementBasedFoepplvonKarmanEquations::fill_in_contribution_to_jacobian_and_mass_matrix(), oomph::PVDEquationsWithPressure< DIM >::fill_in_contribution_to_jacobian_and_mass_matrix(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::fill_in_contribution_to_jacobian_and_mass_matrix(), oomph::FSIImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::fill_in_contribution_to_jacobian_and_mass_matrix(), oomph::FluxTransportEquations< DIM >::fill_in_contribution_to_mass_matrix(), oomph::YoungLaplaceContactAngleElement< ELEMENT >::fill_in_contribution_to_residuals(), oomph::AxisymmetricSolidTractionElement< ELEMENT >::fill_in_contribution_to_residuals(), oomph::ClampedSlidingHermiteBeamBoundaryConditionElement::fill_in_contribution_to_residuals(), oomph::ClampedHermiteShellBoundaryConditionElement::fill_in_contribution_to_residuals(), oomph::FSIAxisymmetricLinearElasticityTractionElement< ELASTICITY_BULK_ELEMENT, NAVIER_STOKES_BULK_ELEMENT >::fill_in_contribution_to_residuals_axisym_fsi_traction(), oomph::AxisymmetricPoroelasticityTractionElement< POROELASTICITY_BULK_ELEMENT >::fill_in_contribution_to_residuals_axisym_poroelasticity_face(), oomph::AxisymmetricPVDEquations::fill_in_contribution_to_residuals_axisym_pvd(), oomph::AxisymmetricLinearElasticityTractionElement< ELEMENT >::fill_in_contribution_to_residuals_axisymmetric_linear_elasticity_traction(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::fill_in_contribution_to_residuals_axisymmetric_nst_traction(), oomph::KirchhoffLoveBeamEquations::fill_in_contribution_to_residuals_beam(), oomph::DarcyFaceElement< ELEMENT >::fill_in_contribution_to_residuals_darcy_face(), oomph::PoroelasticityFaceElement< ELEMENT >::fill_in_contribution_to_residuals_darcy_face(), oomph::TimeHarmonicLinElastLoadedByHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::fill_in_contribution_to_residuals_helmholtz_traction(), oomph::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::fill_in_contribution_to_residuals_helmholtz_traction(), oomph::FourierDecomposedTimeHarmonicLinElastLoadedByHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::fill_in_contribution_to_residuals_helmholtz_traction(), oomph::LinearElasticityTractionElement< ELEMENT >::fill_in_contribution_to_residuals_linear_elasticity_traction(), oomph::KirchhoffLoveShellEquations::fill_in_contribution_to_residuals_shell(), oomph::SolidTractionElement< ELEMENT >::fill_in_contribution_to_residuals_solid_traction(), oomph::TimeHarmonicFourierDecomposedLinearElasticityTractionElement< ELEMENT >::fill_in_contribution_to_residuals_time_harmonic_fourier_decomposed_linear_elasticity_traction(), oomph::PMLTimeHarmonicLinearElasticityTractionElement< ELEMENT >::fill_in_contribution_to_residuals_time_harmonic_linear_elasticity_traction(), oomph::TimeHarmonicLinearElasticityTractionElement< ELEMENT >::fill_in_contribution_to_residuals_time_harmonic_linear_elasticity_traction(), oomph::AxisymmetricLinearElasticityEquations::fill_in_generic_contribution_to_residuals_axisymmetric_linear_elasticity(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::fill_in_generic_contribution_to_residuals_displ_lagr_multiplier(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::fill_in_generic_contribution_to_residuals_fourier_decomp_time_harmonic_linear_elasticity(), oomph::FSIImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::fill_in_generic_contribution_to_residuals_fsi_displ_lagr_multiplier(), oomph::RefineableLinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_linear_elasticity(), oomph::LinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_linear_elasticity(), oomph::ImposeImpenetrabilityElement< ELEMENT >::fill_in_generic_contribution_to_residuals_parall_lagr_multiplier(), oomph::ImposeParallelOutflowElement< ELEMENT >::fill_in_generic_contribution_to_residuals_parall_lagr_multiplier(), oomph::RefineablePVDEquations< DIM >::fill_in_generic_contribution_to_residuals_pvd(), oomph::PVDEquations< DIM >::fill_in_generic_contribution_to_residuals_pvd(), oomph::RefineableTimeHarmonicLinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_time_harmonic_linear_elasticity(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_time_harmonic_linear_elasticity(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::fill_in_generic_contribution_to_residuals_time_harmonic_linear_elasticity(), oomph::AxisymmetricNavierStokesEquations::fill_in_generic_dresidual_contribution_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_generic_dresidual_contribution_axi_nst(), oomph::SolidFiniteElement::fill_in_generic_jacobian_for_solid_ic(), oomph::RefineableNavierStokesEquations< DIM >::fill_in_generic_pressure_advection_diffusion_contribution_nst(), oomph::NavierStokesEquations< DIM >::fill_in_generic_pressure_advection_diffusion_contribution_nst(), oomph::PolarNavierStokesTractionElement< ELEMENT >::fill_in_generic_residual_contribution(), oomph::RefineablePolarNavierStokesEquations::fill_in_generic_residual_contribution(), oomph::DarcyEquations< 2 >::fill_in_generic_residual_contribution(), oomph::PolarNavierStokesEquations::fill_in_generic_residual_contribution(), oomph::PoroelasticityEquations< 2 >::fill_in_generic_residual_contribution(), oomph::AxisymmetricPoroelasticityEquations::fill_in_generic_residual_contribution(), oomph::RefineableAdvectionDiffusionEquations< DIM >::fill_in_generic_residual_contribution_adv_diff(), oomph::SteadyAxisymAdvectionDiffusionEquations::fill_in_generic_residual_contribution_adv_diff(), oomph::AdvectionDiffusionEquations< DIM >::fill_in_generic_residual_contribution_adv_diff(), oomph::AdvectionDiffusionFluxElement< ELEMENT >::fill_in_generic_residual_contribution_adv_diff_flux(), oomph::SteadyAxisymAdvectionDiffusionFluxElement< ELEMENT >::fill_in_generic_residual_contribution_adv_diff_flux(), oomph::RefineableAdvectionDiffusionReactionEquations< NREAGENT, DIM >::fill_in_generic_residual_contribution_adv_diff_react(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::fill_in_generic_residual_contribution_adv_diff_react(), oomph::RefineableAxisymAdvectionDiffusionEquations::fill_in_generic_residual_contribution_axi_adv_diff(), oomph::AxisymAdvectionDiffusionEquations::fill_in_generic_residual_contribution_axi_adv_diff(), oomph::AxisymAdvectionDiffusionFluxElement< ELEMENT >::fill_in_generic_residual_contribution_axi_adv_diff_flux(), oomph::RefineableAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::RefineableGeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::AxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::fill_in_generic_residual_contribution_axisym_poroelastic_fsi(), oomph::AxisymmetricPVDEquationsWithPressure::fill_in_generic_residual_contribution_axisym_pvd_with_pressure(), oomph::BiharmonicEquations< DIM >::fill_in_generic_residual_contribution_biharmonic(), oomph::RefineableGeneralisedAdvectionDiffusionEquations< DIM >::fill_in_generic_residual_contribution_cons_adv_diff(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::fill_in_generic_residual_contribution_cons_adv_diff(), oomph::RefineableGeneralisedAxisymAdvectionDiffusionEquations::fill_in_generic_residual_contribution_cons_axisym_adv_diff(), oomph::NavierStokesTractionElement< ELEMENT >::fill_in_generic_residual_contribution_fluid_traction(), oomph::NavierStokesFluxControlElement< ELEMENT >::fill_in_generic_residual_contribution_fluid_traction(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::fill_in_generic_residual_contribution_fluid_traction(), oomph::FluxTransportEquations< DIM >::fill_in_generic_residual_contribution_flux_transport(), oomph::FourierDecomposedHelmholtzEquations::fill_in_generic_residual_contribution_fourier_decomposed_helmholtz(), oomph::FourierDecomposedHelmholtzDtNBoundaryElement< ELEMENT >::fill_in_generic_residual_contribution_fourier_decomposed_helmholtz_DtN_bc(), oomph::FourierDecomposedHelmholtzFluxElement< ELEMENT >::fill_in_generic_residual_contribution_fourier_decomposed_helmholtz_flux(), oomph::RefineableFpPressureAdvDiffRobinBCElement< ELEMENT >::fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(), oomph::FpPressureAdvDiffRobinBCElement< ELEMENT >::fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(), oomph::LinearisedFSIAxisymmetricNStNoSlipBCElementElement< FLUID_BULK_ELEMENT, SOLID_BULK_ELEMENT >::fill_in_generic_residual_contribution_fsi_no_slip_axisym(), oomph::RefineableHelmholtzEquations< DIM >::fill_in_generic_residual_contribution_helmholtz(), oomph::RefineablePMLHelmholtzEquations< DIM, PML_ELEMENT >::fill_in_generic_residual_contribution_helmholtz(), oomph::HelmholtzEquations< DIM >::fill_in_generic_residual_contribution_helmholtz(), oomph::PMLHelmholtzEquations< DIM, PML_ELEMENT >::fill_in_generic_residual_contribution_helmholtz(), oomph::HelmholtzAbsorbingBCElement< ELEMENT >::fill_in_generic_residual_contribution_helmholtz_abc(), oomph::HelmholtzDtNBoundaryElement< ELEMENT >::fill_in_generic_residual_contribution_helmholtz_DtN_bc(), oomph::HelmholtzFluxElement< ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux(), oomph::PMLHelmholtzFluxElement< ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux(), oomph::FourierDecomposedHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux_from_displacement(), oomph::HelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux_from_displacement(), oomph::PMLHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux_from_displacement(), oomph::FluidInterfaceElement::fill_in_generic_residual_contribution_interface(), oomph::PointFluidInterfaceBoundingElement::fill_in_generic_residual_contribution_interface_boundary(), oomph::LineFluidInterfaceBoundingElement::fill_in_generic_residual_contribution_interface_boundary(), oomph::RefineableLinearWaveEquations< DIM >::fill_in_generic_residual_contribution_lin_wave(), oomph::LinearWaveEquations< DIM >::fill_in_generic_residual_contribution_lin_wave(), oomph::LinearWaveFluxElement< ELEMENT >::fill_in_generic_residual_contribution_lin_wave_flux(), oomph::LinearisedAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_linearised_axi_nst(), oomph::RefineableLinearisedAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_linearised_axi_nst(), oomph::LinearisedNavierStokesEquations::fill_in_generic_residual_contribution_linearised_nst(), oomph::RefineableLinearisedNavierStokesEquations::fill_in_generic_residual_contribution_linearised_nst(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::RefineableNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::NavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::PeriodicOrbitEquations::fill_in_generic_residual_contribution_orbit(), oomph::PMLFourierDecomposedHelmholtzFluxElement< ELEMENT >::fill_in_generic_residual_contribution_pml_fourier_decomposed_helmholtz_flux(), oomph::RefineablePoissonEquations< DIM >::fill_in_generic_residual_contribution_poisson(), oomph::PoissonEquations< DIM >::fill_in_generic_residual_contribution_poisson(), oomph::PoissonFluxElement< ELEMENT >::fill_in_generic_residual_contribution_poisson_flux(), oomph::RefineablePVDEquationsWithPressure< DIM >::fill_in_generic_residual_contribution_pvd_with_pressure(), oomph::PVDEquationsWithPressure< DIM >::fill_in_generic_residual_contribution_pvd_with_pressure(), oomph::RefineableSphericalAdvectionDiffusionEquations::fill_in_generic_residual_contribution_spherical_adv_diff(), oomph::SphericalAdvectionDiffusionEquations::fill_in_generic_residual_contribution_spherical_adv_diff(), oomph::SphericalAdvectionDiffusionFluxElement< ELEMENT >::fill_in_generic_residual_contribution_spherical_adv_diff_flux(), oomph::SphericalNavierStokesEquations::fill_in_generic_residual_contribution_spherical_nst(), oomph::RefineableSphericalNavierStokesEquations::fill_in_generic_residual_contribution_spherical_nst(), oomph::RefineableUnsteadyHeatEquations< DIM >::fill_in_generic_residual_contribution_ust_heat(), oomph::UnsteadyHeatEquations< DIM >::fill_in_generic_residual_contribution_ust_heat(), oomph::UnsteadyHeatFluxElement< ELEMENT >::fill_in_generic_residual_contribution_ust_heat_flux(), oomph::LineVolumeConstraintBoundingElement::fill_in_generic_residual_contribution_volume_constraint(), oomph::AxisymmetricVolumeConstraintBoundingElement::fill_in_generic_residual_contribution_volume_constraint(), oomph::SurfaceVolumeConstraintBoundingElement::fill_in_generic_residual_contribution_volume_constraint(), oomph::WomersleyEquations< DIM >::fill_in_generic_residual_contribution_womersley(), oomph::SolidFiniteElement::fill_in_jacobian_for_newmark_accel(), oomph::GeneralisedElement::fill_in_jacobian_from_external_by_fd(), oomph::ElementWithExternalElement::fill_in_jacobian_from_external_interaction_field_by_fd(), oomph::ElementWithExternalElement::fill_in_jacobian_from_external_interaction_geometric_by_fd(), oomph::ElementWithMovingNodes::fill_in_jacobian_from_geometric_data(), oomph::GeneralisedElement::fill_in_jacobian_from_internal_by_fd(), oomph::RefineableElement::fill_in_jacobian_from_nodal_by_fd(), oomph::FiniteElement::fill_in_jacobian_from_nodal_by_fd(), oomph::RefineableSolidElement::fill_in_jacobian_from_solid_position_by_fd(), oomph::SolidFiniteElement::fill_in_jacobian_from_solid_position_by_fd(), oomph::RefineableNavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::fill_in_off_diagonal_block_analytic(), oomph::NavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::fill_in_off_diagonal_block_analytic(), oomph::BuoyantQCrouzeixRaviartElement< DIM >::fill_in_off_diagonal_jacobian_blocks_analytic(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::fill_in_off_diagonal_jacobian_blocks_analytic(), oomph::BuoyantQCrouzeixRaviartElement< DIM >::fill_in_off_diagonal_jacobian_blocks_by_fd(), oomph::PseudoSolidNodeUpdateElement< BASIC, SOLID >::fill_in_shape_derivatives(), oomph::PseudoSolidNodeUpdateElement< BASIC, SOLID >::fill_in_shape_derivatives_by_fd(), oomph::RefineablePseudoSolidNodeUpdateElement< BASIC, SOLID >::fill_in_shape_derivatives_by_fd(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::find_distance_to_free_surface(), oomph::LAPACK_QZ::find_eigenvalues(), oomph::BinaryTreeForest::find_neighbours(), oomph::QuadTreeForest::find_neighbours(), oomph::OcTreeForest::find_neighbours(), oomph::Multi_domain_functions::first_closer_than_second(), oomph::FishDomain::FishDomain(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::fix_pressure(), oomph::LinearisedQCrouzeixRaviartElement::fix_pressure(), oomph::LinearisedAxisymmetricQTaylorHoodElement::fix_pressure(), oomph::LinearisedQTaylorHoodElement::fix_pressure(), oomph::AxisymmetricPoroelasticityEquations::fluid_body_force(), oomph::FSIWallElement::fluid_load_vector(), oomph::GeneralisedElement::flush_external_data(), oomph::EulerEquations< DIM >::flux(), oomph::DGFaceElement::flux_index(), for(), oomph::PoroelasticityEquations< 2 >::force_fluid(), oomph::PoroelasticityEquations< 2 >::force_solid(), oomph::FourierDecomposedTimeHarmonicLinElastLoadedByHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::FourierDecomposedTimeHarmonicLinElastLoadedByHelmholtzPressureBCElement(), oomph::FSIAxisymmetricLinearElasticityTractionElement< ELASTICITY_BULK_ELEMENT, NAVIER_STOKES_BULK_ELEMENT >::FSIAxisymmetricLinearElasticityTractionElement(), oomph::FSIDrivenCavityMesh< ELEMENT >::FSIDrivenCavityMesh(), oomph::PolarNavierStokesEquations::full_output(), oomph::SphericalNavierStokesEquations::full_output(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::full_output(), oomph::NavierStokesEquations< DIM >::full_output(), oomph::HelmholtzMGPreconditioner< DIM >::full_setup(), oomph::MGSolver< DIM >::full_setup(), oomph::FullCircleDomain::FullCircleDomain(), oomph::FullCircleMesh< ELEMENT >::FullCircleMesh(), oomph::RefineableLinearisedAxisymmetricQCrouzeixRaviartElement::further_build(), oomph::RefineableLinearisedQCrouzeixRaviartElement::further_build(), oomph::RefineableQPVDElementWithPressure< DIM >::further_build(), oomph::RefineablePolarCrouzeixRaviartElement::further_build(), oomph::RefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::further_build(), oomph::RefineableQCrouzeixRaviartElement< DIM >::further_build(), oomph::PRefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::further_build(), oomph::PRefineableQCrouzeixRaviartElement< DIM >::further_build(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::further_setup_hanging_nodes(), oomph::RefineableLinearisedQTaylorHoodElement::further_setup_hanging_nodes(), oomph::GaussLegendre< 1, NPTS_1D >::GaussLegendre(), oomph::GaussLegendre< 2, NPTS_1D >::GaussLegendre(), oomph::GaussLegendre< 3, NPTS_1D >::GaussLegendre(), oomph::GaussLobattoLegendre< 1, NPTS_1D >::GaussLobattoLegendre(), oomph::GaussLobattoLegendre< 2, NPTS_1D >::GaussLobattoLegendre(), oomph::GaussLobattoLegendre< 3, NPTS_1D >::GaussLobattoLegendre(), oomph::GeneralElasticityTensor::GeneralElasticityTensor(), oomph::Spine::geom_data_pt(), oomph::AlgebraicMesh::geom_object_list_pt(), oomph::MacroElementNodeUpdateNode::geom_object_pt(), oomph::Spine::geom_object_pt(), oomph::AlgebraicNode::geom_object_pt(), oomph::MacroElementNodeUpdateElementBase::geom_object_pt(), oomph::Spine::geom_parameter(), oomph::ElementWithMovingNodes::geometric_data_local_eqn(), oomph::GeompackQuadScaffoldMesh::GeompackQuadScaffoldMesh(), oomph::EigenProblemHandler::get_all_vectors_and_matrices(), oomph::SumOfMatrices::get_as_indices(), LinearisedAxisymmetricQTaylorHoodMultiDomainElement::get_base_flow_dudx(), LinearisedQTaylorHoodMultiDomainElement::get_base_flow_dudx(), oomph::LinearisedAxisymmetricNavierStokesEquations::get_base_flow_dudx(), oomph::LinearisedNavierStokesEquations::get_base_flow_dudx(), LinearisedQCrouzeixRaviartMultiDomainElement::get_base_flow_dudx(), LinearisedAxisymmetricQCrouzeixRaviartMultiDomainElement::get_base_flow_dudx(), RefineableLinearisedAxisymmetricQTaylorHoodMultiDomainElement::get_base_flow_dudx(), RefineableLinearisedQTaylorHoodMultiDomainElement::get_base_flow_dudx(), RefineableLinearisedAxisymmetricQCrouzeixRaviartMultiDomainElement::get_base_flow_dudx(), RefineableLinearisedQCrouzeixRaviartMultiDomainElement::get_base_flow_dudx(), LinearisedQTaylorHoodMultiDomainElement::get_base_flow_u(), LinearisedAxisymmetricQTaylorHoodMultiDomainElement::get_base_flow_u(), oomph::LinearisedAxisymmetricNavierStokesEquations::get_base_flow_u(), oomph::LinearisedNavierStokesEquations::get_base_flow_u(), LinearisedAxisymmetricQCrouzeixRaviartMultiDomainElement::get_base_flow_u(), LinearisedQCrouzeixRaviartMultiDomainElement::get_base_flow_u(), RefineableLinearisedAxisymmetricQTaylorHoodMultiDomainElement::get_base_flow_u(), RefineableLinearisedQTaylorHoodMultiDomainElement::get_base_flow_u(), RefineableLinearisedAxisymmetricQCrouzeixRaviartMultiDomainElement::get_base_flow_u(), RefineableLinearisedQCrouzeixRaviartMultiDomainElement::get_base_flow_u(), oomph::RefineableQElement< 3 >::get_bcs(), NonRefineableBinArray::get_bin(), NonRefineableBinArray::get_bin_vertices(), oomph::BlockPreconditioner< CRDoubleMatrix >::get_block(), oomph::BlockPreconditioner< CRDoubleMatrix >::get_block_other_matrix(), oomph::BlockPreconditioner< CRDoubleMatrix >::get_block_vectors(), oomph::BlockPreconditioner< CRDoubleMatrix >::get_blocks(), oomph::PolarNavierStokesEquations::get_body_force(), oomph::AxisymmetricNavierStokesEquations::get_body_force_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::get_body_force_axi_nst(), oomph::AxisymmetricNavierStokesEquations::get_body_force_gradient_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::get_body_force_gradient_axi_nst(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_body_force_gradient_nst(), oomph::NavierStokesEquations< DIM >::get_body_force_gradient_nst(), oomph::RefineableNavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::get_body_force_nst(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_body_force_nst(), oomph::BuoyantQCrouzeixRaviartElement< DIM >::get_body_force_nst(), oomph::NavierStokesEquations< DIM >::get_body_force_nst(), oomph::NavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::get_body_force_nst(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_body_force_nst(), oomph::SphericalNavierStokesEquations::get_body_force_spherical_nst(), oomph::RefineableQElement< 3 >::get_boundaries(), oomph::QElement< 2, NNODE_1D >::get_bulk_node_number(), oomph::QElement< 3, NNODE_1D >::get_bulk_node_number(), oomph::TElement< 2, NNODE_1D >::get_bulk_node_number(), oomph::TElement< 3, NNODE_1D >::get_bulk_node_number(), oomph::FiniteElement::get_centre_of_gravity_and_max_radius_in_terms_of_zeta(), oomph::C1CurvedElementShape< 2, NNODE_1D >::get_coefficient(), oomph::Z2ErrorEstimator::get_combined_error_estimate(), oomph::BlockPreconditioner< CRDoubleMatrix >::get_concatenated_block_vector(), oomph::UnstructuredTwoDMeshGeometryBase::get_connected_vertex_number_on_destination_polyline(), oomph::RefineableTriangleMesh< ELEMENT >::get_connected_vertex_number_on_dst_boundary(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::get_conserved_wind_cons_adv_diff(), oomph::get_conserved_wind_cons_axisym_adv_diff(), oomph::BoundaryNodeBase::get_coordinates_on_boundary(), oomph::Problem::get_data_to_be_sent_during_load_balancing(), oomph::RefineableNavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::get_dbody_force_nst_dexternal_element_data(), oomph::NavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::get_dbody_force_nst_dexternal_element_data(), oomph::PVDEquationsBase< DIM >::get_deformed_covariant_basis_vectors(), oomph::PoissonEquations< DIM >::get_dflux_dnodal_u(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::get_diff_cons_adv_diff(), oomph::get_diff_cons_axisym_adv_diff(), oomph::ElementWithMovingNodes::get_dnodal_coordinates_dgeom_dofs(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::get_dof_numbers_for_unknowns(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquationsBase::get_dof_numbers_for_unknowns(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM, PML_ELEMENT >::get_dof_numbers_for_unknowns(), oomph::LinearElasticityEquationsBase< DIM >::get_dof_numbers_for_unknowns(), oomph::PVDEquationsBase< DIM >::get_dof_numbers_for_unknowns(), oomph::ImposeImpenetrabilityElement< ELEMENT >::get_dof_numbers_for_unknowns(), oomph::AxisymmetricLinearElasticityEquationsBase::get_dof_numbers_for_unknowns(), oomph::FSIHermiteBeamElement::get_dof_numbers_for_unknowns(), oomph::FSIDiagHermiteShellElement::get_dof_numbers_for_unknowns(), oomph::ClampedHermiteShellBoundaryConditionElement::get_dof_numbers_for_unknowns(), oomph::FSISolidTractionElement< ELEMENT, DIM >::get_dof_numbers_for_unknowns(), oomph::PVDEquationsWithPressure< DIM >::get_dof_numbers_for_unknowns(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::get_dof_numbers_for_unknowns(), oomph::FSIImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::get_dof_numbers_for_unknowns(), oomph::Problem::get_dofs(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::get_dofs_for_element(), oomph::NavierStokesSurfaceDragTorqueElement< ELEMENT >::get_drag_and_torque(), oomph::RefineablePoissonEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::RefineableAxisymmetricNavierStokesEquations::get_dresidual_dnodal_coordinates(), oomph::RefineableGeneralisedNewtonianAxisymmetricNavierStokesEquations::get_dresidual_dnodal_coordinates(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::PoissonEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::RefineableElement::get_dresidual_dnodal_coordinates(), oomph::RefineableNavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::AxisymmetricNavierStokesEquations::get_dresidual_dnodal_coordinates(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::get_dresidual_dnodal_coordinates(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::NavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::FiniteElement::get_dresidual_dnodal_coordinates(), oomph::FoldHandler::get_dresiduals_dparameter(), oomph::PitchForkHandler::get_dresiduals_dparameter(), oomph::HopfHandler::get_dresiduals_dparameter(), oomph::Problem::get_dvaluesdt(), oomph::Mesh::get_efficiency_of_mesh_distribution(), oomph::Z2ErrorEstimator::get_element_errors(), oomph::DummyErrorEstimator::get_element_errors(), oomph::PVDEquationsBase< DIM >::get_energy(), oomph::KirchhoffLoveShellEquations::get_energy(), oomph::KirchhoffLoveBeamEquations::get_energy(), oomph::RefineableTriangleMesh< ELEMENT >::get_face_mesh_representation(), oomph::BlockPreconditioner< CRDoubleMatrix >::get_fine_grain_dof_types_in(), oomph::Problem::get_first_and_last_element_for_assembly(), oomph::Mesh::get_halo_node_stats(), oomph::Mesh::get_haloed_node_stats(), oomph::Problem::get_hessian_vector_products(), oomph::ImmersedRigidBodyTriangleMeshPolygon::get_initial_position(), oomph::PeriodicOrbitBaseElement::get_inner_product_matrix(), oomph::GeneralisedElement::get_inner_product_vectors(), oomph::RefineableLinearElasticityEquations< DIM >::get_interpolated_values(), oomph::RefineableTimeHarmonicLinearElasticityEquations< DIM >::get_interpolated_values(), oomph::RefineableQSphericalTaylorHoodElement::get_interpolated_values(), oomph::RefineablePolarTaylorHoodElement::get_interpolated_values(), oomph::RefineableLinearisedAxisymmetricQCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableLinearisedQCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableGeneralisedNewtonianQTaylorHoodElement< DIM >::get_interpolated_values(), oomph::RefineableAxisymmetricQTaylorHoodElement::get_interpolated_values(), oomph::RefineableGeneralisedNewtonianAxisymmetricQTaylorHoodElement::get_interpolated_values(), oomph::RefineableQSphericalCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::get_interpolated_values(), oomph::RefineablePolarCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableLinearisedQTaylorHoodElement::get_interpolated_values(), oomph::RefineableQTaylorHoodElement< DIM >::get_interpolated_values(), oomph::VorticitySmootherElement< ELEMENT >::get_interpolated_values(), oomph::RefineableAxisymmetricQCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableGeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::get_interpolated_values(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_interpolated_values(), oomph::RefineableQCrouzeixRaviartElement< DIM >::get_interpolated_values(), oomph::PRefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::get_interpolated_values(), oomph::PRefineableQCrouzeixRaviartElement< DIM >::get_interpolated_values(), oomph::RefineableQSphericalTaylorHoodElement::get_interpolating_node_at_local_coordinate(), oomph::RefineablePolarTaylorHoodElement::get_interpolating_node_at_local_coordinate(), oomph::RefineableGeneralisedNewtonianQTaylorHoodElement< DIM >::get_interpolating_node_at_local_coordinate(), oomph::RefineableAxisymmetricQTaylorHoodElement::get_interpolating_node_at_local_coordinate(), oomph::RefineableGeneralisedNewtonianAxisymmetricQTaylorHoodElement::get_interpolating_node_at_local_coordinate(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::get_interpolating_node_at_local_coordinate(), oomph::RefineableLinearisedQTaylorHoodElement::get_interpolating_node_at_local_coordinate(), oomph::RefineableQTaylorHoodElement< DIM >::get_interpolating_node_at_local_coordinate(), oomph::RefineableQPVDElementWithContinuousPressure< DIM >::get_interpolating_node_at_local_coordinate(), oomph::Problem::get_inverse_mass_matrix_times_residuals(), oomph::FpPreconditionerAssemblyHandler::get_jacobian(), oomph::Hijacked< SpineElement< FaceGeometry< ELEMENT > > >::get_jacobian(), oomph::ImposeFluxForWomersleyElement< DIM >::get_jacobian(), oomph::PitchForkHandler::get_jacobian(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::get_kinetic_energy_flux(), oomph::PolarCrouzeixRaviartElement::get_load_data(), oomph::PolarTaylorHoodElement::get_load_data(), oomph::LineVisualiser::get_local_plot_points_coordinates(), oomph::RefineablePVDEquationsWithPressure< DIM >::get_mass_matrix_diagonal(), oomph::PVDEquationsWithPressure< DIM >::get_mass_matrix_diagonal(), oomph::CRDoubleMatrix::get_matrix_transpose(), oomph::Problem::get_my_eqns(), BinArray::get_neighbouring_bins_helper(), oomph::C1CurvedElementBase< NNODE_1D >::get_nodal_eqn_curve(), oomph::C1CurvedElementBase< NNODE_1D >::get_nodal_value_curve1(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::get_node_at_local_coordinate(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::get_node_at_local_coordinate(), oomph::QElement< 2, NNODE_1D >::get_node_at_local_coordinate(), oomph::QElement< 3, NNODE_1D >::get_node_at_local_coordinate(), oomph::FiniteElement::get_node_at_local_coordinate(), oomph::FiniteElement::get_node_number(), oomph::Mesh::get_node_reordering(), oomph::KirchhoffLoveBeamEquations::get_non_unit_tangent(), oomph::KirchhoffLoveShellEquations::get_normal(), oomph::KirchhoffLoveBeamEquations::get_normal(), oomph::BlockDiagonalPreconditioner< MATRIX >::get_other_diag_ds(), oomph::LineVisualiser::get_output_data(), oomph::Conformal2DPMLElement::get_pml_properties(), oomph::NavierStokesSchurComplementPreconditioner::get_pressure_advection_diffusion_matrix(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::RefineableNavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::SphericalNavierStokesEquations::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::AxisymmetricNavierStokesEquations::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::NavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::get_previous_dofs_for_element(), oomph::PVDEquationsBase< DIM >::get_principal_stress(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::get_rate_of_traction_work(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::get_rate_of_traction_work_components(), oomph::Z2ErrorEstimator::get_recovered_flux_in_patch(), VorticitySmoother< ELEMENT >::get_recovered_vorticity_in_patch(), oomph::RefineableTriangleMesh< ELEMENT >::get_required_elemental_information_helper(), oomph::RefineableTriangleMesh< ELEMENT >::get_required_elemental_information_load_balance_helper(), oomph::Missing_masters_functions::get_required_master_nodal_information_helper(), oomph::Multi_domain_functions::get_required_master_nodal_information_helper(), oomph::Missing_masters_functions::get_required_nodal_information_helper(), oomph::Multi_domain_functions::get_required_nodal_information_helper(), oomph::RefineableTriangleMesh< ELEMENT >::get_required_nodal_information_helper(), oomph::RefineableTriangleMesh< ELEMENT >::get_required_nodal_information_load_balance_helper(), oomph::FpPreconditionerAssemblyHandler::get_residuals(), oomph::Hijacked< SpineElement< FaceGeometry< ELEMENT > > >::get_residuals(), oomph::FoldHandler::get_residuals(), oomph::PitchForkHandler::get_residuals(), oomph::HopfHandler::get_residuals(), oomph::TElement< 2, NNODE_1D >::get_s_plot(), oomph::TElement< 3, NNODE_1D >::get_s_plot(), CGALSamplePointContainer::get_sample_points(), oomph::PolarStressIntegralElement< ELEMENT >::get_shear_stress(), oomph::RefineableSolidQElement< 3 >::get_solid_bcs(), oomph::SegregatableFSIProblem::get_solid_change(), oomph::AxisymmetricNavierStokesEquations::get_source_fct_gradient(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::get_source_fct_gradient(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_source_gradient_nst(), oomph::NavierStokesEquations< DIM >::get_source_gradient_nst(), oomph::PoissonEquations< DIM >::get_source_gradient_poisson(), oomph::YoungLaplaceEquations::get_spine(), oomph::YoungLaplaceEquations::get_spine_base(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::get_strain(), oomph::PoroelasticityEquations< 2 >::get_strain(), oomph::PVDEquationsBase< DIM >::get_strain(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM, PML_ELEMENT >::get_strain(), oomph::LinearElasticityEquationsBase< DIM >::get_strain(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::get_strain(), oomph::AxisymmetricLinearElasticityEquations::get_strain(), oomph::KirchhoffLoveShellEquations::get_strain_and_bend(), oomph::PoroelasticityEquations< 2 >::get_stress(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::get_stress(), oomph::LinearElasticityEquations< DIM >::get_stress(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::get_stress(), oomph::PVDEquations< DIM >::get_stress(), oomph::PVDEquationsWithPressure< DIM >::get_stress(), oomph::OcTree::get_the_other_face(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::get_total_flux(), oomph::get_total_flux(), oomph::AxisymmetricSolidTractionElement< ELEMENT >::get_traction(), oomph::PolarNavierStokesTractionElement< ELEMENT >::get_traction(), oomph::NavierStokesTractionElement< ELEMENT >::get_traction(), oomph::PolarNavierStokesEquations::get_traction(), oomph::SphericalNavierStokesEquations::get_traction(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_traction(), oomph::FSISolidTractionElement< ELEMENT, DIM >::get_traction(), oomph::NavierStokesEquations< DIM >::get_traction(), oomph::FSILinearisedAxisymPoroelasticTractionElement< POROELASTICITY_BULK_ELEMENT, NAVIER_STOKES_BULK_ELEMENT >::get_traction(), oomph::TypeNames::get_type_name(), oomph::WomersleyEquations< DIM >::get_volume_flux(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::get_volume_flux(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::get_volume_flux(), oomph::SphericalNavierStokesEquations::get_vorticity(), oomph::NavierStokesEquations< DIM >::get_vorticity(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_vorticity(), oomph::AdvectionDiffusionEquations< DIM >::get_wind_adv_diff(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::get_wind_adv_diff_react(), oomph::AxisymAdvectionDiffusionEquations::get_wind_axi_adv_diff(), oomph::SteadyAxisymAdvectionDiffusionEquations::get_wind_axisym_adv_diff(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::get_wind_cons_adv_diff(), oomph::get_wind_cons_axisym_adv_diff(), oomph::ScalarAdvectionEquations< DIM >::get_wind_scalar_adv(), oomph::SphericalAdvectionDiffusionEquations::get_wind_spherical_adv_diff(), oomph::QSolidElementBase::get_x_and_xi(), oomph::QElementBase::get_x_from_macro_element(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_Z2_compound_flux_indices(), oomph::RefineableGeneralisedNewtonianAxisymmetricNavierStokesEquations::get_Z2_flux(), oomph::RefineableAxisymmetricNavierStokesEquations::get_Z2_flux(), oomph::RefineablePVDEquations< DIM >::get_Z2_flux(), oomph::RefineableSphericalNavierStokesEquations::get_Z2_flux(), oomph::RefineableLinearisedAxisymmetricNavierStokesEquations::get_Z2_flux(), oomph::RefineableLinearisedNavierStokesEquations::get_Z2_flux(), oomph::RefineableHelmholtzEquations< DIM >::get_Z2_flux(), oomph::RefineablePMLHelmholtzEquations< DIM, PML_ELEMENT >::get_Z2_flux(), oomph::RefineableLinearElasticityEquations< DIM >::get_Z2_flux(), oomph::RefineableTimeHarmonicLinearElasticityEquations< DIM >::get_Z2_flux(), oomph::RefineablePolarNavierStokesEquations::get_Z2_flux(), oomph::TAxisymmetricLinearElasticityElement< NNODE_1D >::get_Z2_flux(), oomph::TPMLTimeHarmonicLinearElasticityElement< DIM, NNODE_1D, PML_ELEMENT >::get_Z2_flux(), oomph::TLinearElasticityElement< DIM, NNODE_1D >::get_Z2_flux(), oomph::TTimeHarmonicLinearElasticityElement< DIM, NNODE_1D >::get_Z2_flux(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::get_Z2_flux(), oomph::THelmholtzElement< DIM, NNODE_1D >::get_Z2_flux(), oomph::TFourierDecomposedHelmholtzElement< NNODE_1D >::get_Z2_flux(), oomph::TPMLHelmholtzElement< DIM, NNODE_1D, PML_ELEMENT >::get_Z2_flux(), oomph::TPMLFourierDecomposedHelmholtzElement< NNODE_1D, PML_ELEMENT >::get_Z2_flux(), oomph::GeneralisedNewtonianAxisymmetricTCrouzeixRaviartElement::get_Z2_flux(), oomph::GeneralisedNewtonianTCrouzeixRaviartElement< DIM >::get_Z2_flux(), oomph::AxisymmetricTCrouzeixRaviartElement::get_Z2_flux(), oomph::TCrouzeixRaviartElement< DIM >::get_Z2_flux(), oomph::RefineablePVDEquationsWithPressure< DIM >::get_Z2_flux(), oomph::RefineableNavierStokesEquations< DIM >::get_Z2_flux(), oomph::TTimeHarmonicFourierDecomposedLinearElasticityElement< NNODE_1D >::get_Z2_flux(), oomph::GeneralisedNewtonianAxisymmetricTTaylorHoodElement::get_Z2_flux(), oomph::AxisymmetricTTaylorHoodElement::get_Z2_flux(), oomph::TTaylorHoodElement< DIM >::get_Z2_flux(), oomph::GeneralisedNewtonianTTaylorHoodElement< DIM >::get_Z2_flux(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_Z2_flux(), oomph::TPVDElement< DIM, NNODE_1D >::get_Z2_flux(), oomph::TPVDBubbleEnrichedElement< DIM, NNODE_1D >::get_Z2_flux(), oomph::TPVDElementWithContinuousPressure< DIM >::get_Z2_flux(), oomph::Orthpoly::gl_nodes(), oomph::Orthpoly::gll_nodes(), oomph::Problem::global_data_pt(), oomph::Problem::global_dof_pt(), oomph::PitchForkHandler::global_eqn_number(), oomph::PMLHelmholtzPowerElement< ELEMENT >::global_flux_contribution(), oomph::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::global_flux_contribution_from_helmholtz(), oomph::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::global_flux_contribution_from_solid(), oomph::CRDoubleMatrix::global_matrix(), oomph::TetgenScaffoldMesh::global_node_number(), oomph::TriangleScaffoldMesh::global_node_number(), oomph::PMLHelmholtzPowerElement< ELEMENT >::global_power_contribution(), oomph::FourierDecomposedHelmholtzBCElementBase< ELEMENT >::global_power_contribution(), oomph::HelmholtzBCElementBase< ELEMENT >::global_power_contribution(), oomph::PMLFourierDecomposedHelmholtzPowerMonitorElement< ELEMENT >::global_power_contribution(), oomph::DoubleVectorWithHaloEntries::global_value(), oomph::Problem::globally_convergent_line_search(), oomph::OcTree::gteq_face_neighbour(), oomph::OcTree::gteq_true_edge_neighbour(), oomph::CumulativeTimings::halt(), oomph::Timer::halt(), oomph::Hankel_functions_for_helmholtz_problem::Hankel_first(), oomph::HypreInterface::hypre_solve(), oomph::HypreInterface::hypre_solver_setup(), oomph::ElementWithExternalElement::identify_all_field_data_for_external_interaction(), oomph::RefineableAdvectionDiffusionBoussinesqElement< AD_ELEMENT, NST_ELEMENT >::identify_all_field_data_for_external_interaction(), oomph::FSIWallElement::identify_all_field_data_for_external_interaction(), oomph::ElementWithExternalElement::identify_all_geometric_data_for_external_interaction(), oomph::FSIWallElement::identify_all_geometric_data_for_external_interaction(), oomph::TriangleMesh< ELEMENT >::identify_boundary_segments_and_assign_initial_zeta_values(), oomph::RefineableElement::identify_field_data_for_interactions(), oomph::FiniteElement::identify_field_data_for_interactions(), oomph::GeneralisedNewtonianAxisymmetricTCrouzeixRaviartElement::identify_load_data(), oomph::GeneralisedNewtonianTCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::AxisymmetricTCrouzeixRaviartElement::identify_load_data(), oomph::TCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::RefineableGeneralisedNewtonianQTaylorHoodElement< DIM >::identify_load_data(), oomph::GeneralisedNewtonianAxisymmetricTTaylorHoodElement::identify_load_data(), oomph::AxisymmetricTTaylorHoodElement::identify_load_data(), oomph::QSphericalCrouzeixRaviartElement::identify_load_data(), oomph::GeneralisedNewtonianTTaylorHoodElement< DIM >::identify_load_data(), oomph::TTaylorHoodElement< DIM >::identify_load_data(), oomph::RefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::RefineableQTaylorHoodElement< DIM >::identify_load_data(), oomph::QSphericalTaylorHoodElement::identify_load_data(), oomph::RefineableQCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::GeneralisedNewtonianQCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::QCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::identify_load_data(), oomph::QTaylorHoodElement< DIM >::identify_load_data(), oomph::SimpleFSIPreconditioner< MATRIX >::identify_required_blocks(), if(), oomph::ImmersedRigidBodyTriangleMeshPolygon::ImmersedRigidBodyTriangleMeshPolygon(), oomph::GeneralisedElement::include_external_data_fd(), oomph::GeneralisedElement::include_internal_data_fd(), oomph::TimeHarmonicIsotropicElasticityTensor::independent_component(), oomph::PMLTimeHarmonicIsotropicElasticityTensor::independent_component(), oomph::IsotropicElasticityTensor::independent_component(), oomph::GeneralElasticityTensor::independent_component(), oomph::DeviatoricIsotropicElasticityTensor::independent_component(), oomph::DenseMatrix< bool >::indexed_output(), oomph::CRDoubleMatrix::inf_norm(), oomph::ImmersedRigidBodyElement::initial_centre_of_mass(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::initial_element_reorder(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::initial_p_order(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::initial_p_order(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::initial_p_order(), oomph::DoubleMultiVector::initialise(), oomph::DenseMatrix< bool >::initialise(), oomph::RankThreeTensor< T >::initialise(), oomph::RankFourTensor< T >::initialise(), oomph::RankFiveTensor< T >::initialise(), oomph::Time::initialise_dt(), oomph::Problem::initialise_dt(), oomph::ElementWithExternalElement::initialise_external_element_storage(), oomph::RefineablePolarTaylorHoodElement::insert_load_data(), oomph::RefineablePolarCrouzeixRaviartElement::insert_load_data(), oomph::SurfactantTransportInterfaceElement::integrate_c(), oomph::FiniteElement::integrate_fct(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::interface_element_pt(), oomph::TwoLayerSpineMesh< ELEMENT >::interface_lower_boundary_element_pt(), oomph::TwoLayerSpineMesh< ELEMENT >::interface_upper_boundary_element_pt(), oomph::GeneralisedElement::internal_data_fd(), oomph::GeneralisedElement::internal_data_pt(), oomph::BlockPreconditioner< CRDoubleMatrix >::internal_dof_block_dimension(), oomph::BlockPreconditioner< CRDoubleMatrix >::internal_dof_number(), oomph::BlockPreconditioner< CRDoubleMatrix >::internal_get_block(), oomph::BlockPreconditioner< CRDoubleMatrix >::internal_get_block_ordered_preconditioner_vector(), oomph::BlockPreconditioner< CRDoubleMatrix >::internal_get_block_vector(), oomph::BlockPreconditioner< CRDoubleMatrix >::internal_get_block_vectors(), oomph::GeneralisedElement::internal_local_eqn(), oomph::TetMeshFacetedClosedSurface::internal_point_for_tetgen(), oomph::BlockPreconditioner< CRDoubleMatrix >::internal_return_block_ordered_preconditioner_vector(), oomph::BlockPreconditioner< CRDoubleMatrix >::internal_return_block_vector(), oomph::BlockPreconditioner< CRDoubleMatrix >::internal_return_block_vectors(), oomph::AxisymmetricLinearElasticityEquationsBase::interpolated_d2u_dt2_axisymmetric_linear_elasticity(), oomph::AxisymmetricPoroelasticityEquations::interpolated_div_du_dt(), oomph::AxisymmetricPoroelasticityEquations::interpolated_div_u(), oomph::AxisymmetricPoroelasticityEquations::interpolated_du_dt(), oomph::AxisymmetricLinearElasticityEquationsBase::interpolated_du_dt_axisymmetric_linear_elasticity(), oomph::FiniteElement::interpolated_dxdt(), oomph::SolidFiniteElement::interpolated_dxids(), oomph::DarcyEquations< 2 >::interpolated_q(), oomph::PoroelasticityEquations< 2 >::interpolated_q(), oomph::AxisymmetricPoroelasticityEquations::interpolated_q(), oomph::DummyBrickElement::interpolated_s_tet(), oomph::DGFaceElement::interpolated_u(), oomph::PoroelasticityEquations< 2 >::interpolated_u(), oomph::AxisymmetricPoroelasticityEquations::interpolated_u(), oomph::AxisymmetricNavierStokesEquations::interpolated_u_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::interpolated_u_axi_nst(), oomph::AxisymmetricLinearElasticityEquationsBase::interpolated_u_axisymmetric_linear_elasticity(), oomph::LinearElasticityEquationsBase< DIM >::interpolated_u_linear_elasticity(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::interpolated_u_nst(), oomph::NavierStokesEquations< DIM >::interpolated_u_nst(), oomph::PolarNavierStokesEquations::interpolated_u_pnst(), oomph::SphericalNavierStokesEquations::interpolated_u_spherical_nst(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquationsBase::interpolated_u_time_harmonic_fourier_decomposed_linear_elasticity(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::interpolated_u_time_harmonic_linear_elasticity(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM, PML_ELEMENT >::interpolated_u_time_harmonic_linear_elasticity(), oomph::FiniteElement::interpolated_x(), oomph::SolidFiniteElement::interpolated_xi(), oomph::FiniteElement::interpolated_zeta(), oomph::C1CurvedElementBase< NNODE_1D >::is_boundary_element(), oomph::UnstructuredTwoDMeshGeometryBase::is_point_inside_polygon_helper(), oomph::Data::is_segregated_solve_pinned(), oomph::FiniteElement::J_eulerian(), oomph::FaceElement::J_eulerian(), oomph::BellElementBase< NNODE_1D >::J_eulerian1(), oomph::C1CurvedElementBase< NNODE_1D >::J_eulerian1(), oomph::FiniteElement::J_eulerian_at_knot(), oomph::FaceElement::J_eulerian_at_knot(), oomph::ProjectableDarcyElement< DARCY_ELEMENT >::jacobian_and_shape_of_field(), oomph::ProjectableAxisymmetricPoroelasticityElement< AXISYMMETRIC_POROELASTICITY_ELEMENT >::jacobian_and_shape_of_field(), oomph::PolarNavierStokesEquations::kin_energy(), oomph::SphericalNavierStokesEquations::kin_energy(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::kin_energy(), oomph::AxisymmetricNavierStokesEquations::kin_energy(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::kin_energy(), oomph::NavierStokesEquations< DIM >::kin_energy(), oomph::Gauss< 1, 2 >::knot(), oomph::Gauss< 1, 3 >::knot(), oomph::Gauss< 1, 4 >::knot(), oomph::Gauss< 2, 2 >::knot(), oomph::Gauss< 2, 3 >::knot(), oomph::Gauss< 2, 4 >::knot(), oomph::Gauss< 3, 2 >::knot(), oomph::Gauss< 3, 3 >::knot(), oomph::Gauss< 3, 4 >::knot(), oomph::TGauss< 1, 2 >::knot(), oomph::TGauss< 1, 3 >::knot(), oomph::TGauss< 1, 4 >::knot(), oomph::TGauss< 1, 5 >::knot(), oomph::TGauss< 2, 2 >::knot(), oomph::TGauss< 2, 3 >::knot(), oomph::TGauss< 2, 4 >::knot(), oomph::TGauss< 2, 13 >::knot(), oomph::TGauss< 2, 9 >::knot(), oomph::TGauss< 2, 16 >::knot(), oomph::TGauss< 2, 5 >::knot(), oomph::TGauss< 3, 2 >::knot(), oomph::TGauss< 3, 3 >::knot(), oomph::TGauss< 3, 5 >::knot(), oomph::GaussLobattoLegendre< 1, NPTS_1D >::knot(), oomph::GaussLobattoLegendre< 2, NPTS_1D >::knot(), oomph::GaussLobattoLegendre< 3, NPTS_1D >::knot(), oomph::GaussLegendre< 1, NPTS_1D >::knot(), oomph::GaussLegendre< 2, NPTS_1D >::knot(), oomph::GaussLegendre< 3, NPTS_1D >::knot(), oomph::RuntimeCalculatedGaussLegendre::knot(), oomph::PseudoElasticPreconditioner::lagrange_multiplier_preconditioner_solve(), oomph::PseudoElasticPreconditionerOld::lagrange_multiplier_preconditioner_solve(), oomph::AxisymmetricPoroelasticityTractionElement< POROELASTICITY_BULK_ELEMENT >::lagrangian_eulerian_translation_factor(), oomph::ChannelWithLeafletDomain::leaflet_pt(), oomph::ChannelSpineMesh< ELEMENT >::left_element_pt(), oomph::ChannelSpineMesh< ELEMENT >::left_spine_pt(), CGALSamplePointContainer::limited_locate_zeta(), oomph::FullCircleDomain::lin_interpolate(), oomph::TubeDomain::lin_interpolate(), oomph::BlackBoxFDNewtonSolver::line_search(), oomph::CylinderWithFlagDomain::linear_interpolate(), oomph::RectangleWithHoleDomain::linear_interpolate(), oomph::LinearElasticityTractionElement< ELEMENT >::LinearElasticityTractionElement(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::LinearisedAxisymmetricQCrouzeixRaviartElement(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::LinearisedAxisymPoroelasticBJS_FSIElement(), oomph::LinearisedFSIAxisymmetricNStNoSlipBCElementElement< FLUID_BULK_ELEMENT, SOLID_BULK_ELEMENT >::LinearisedFSIAxisymmetricNStNoSlipBCElementElement(), oomph::LinearisedQCrouzeixRaviartElement::LinearisedQCrouzeixRaviartElement(), oomph::Problem::load_balance(), oomph::RefineableTriangleMesh< ELEMENT >::load_balance(), oomph::KirchhoffLoveShellEquations::load_rate_of_work(), oomph::FSIHermiteBeamElement::load_vector(), oomph::FSIDiagHermiteShellElement::load_vector(), oomph::QElementBase::local_coord_is_valid(), oomph::QHermiteElement< DIM-1 >::local_coord_is_valid(), oomph::TElementBase::local_coord_is_valid(), oomph::QHermiteElement< DIM-1 >::local_coordinate_of_node(), oomph::QHermiteElement< DIM-1 >::local_fraction_of_node(), oomph::FiniteElement::local_fraction_of_node(), oomph::RefineableElement::local_hang_eqn(), oomph::BellElementBase< NNODE_1D >::local_to_eulerian_mapping2(), oomph::C1CurvedElementBase< NNODE_1D >::local_to_eulerian_mapping2(), oomph::RefineableElement::local_to_eulerian_mapping_diagonal(), oomph::FiniteElement::local_to_eulerian_mapping_diagonal(), oomph::RefineableSolidElement::local_to_lagrangian_mapping_diagonal(), oomph::SolidFiniteElement::local_to_lagrangian_mapping_diagonal(), RefineableBin::locate_zeta(), RefineableBinArray::locate_zeta(), NonRefineableBinArray::locate_zeta(), CGALSamplePointContainer::locate_zeta(), oomph::FiniteElement::locate_zeta(), oomph::Multi_domain_functions::locate_zeta_for_local_coordinates(), oomph::Multi_domain_functions::locate_zeta_for_missing_coordinates(), oomph::TwoLayerSpineMesh< ELEMENT >::lower_layer_element_pt(), oomph::GeometricTElement< 2 >::Lshape(), oomph::DenseComplexMatrix::lubksub(), oomph::CRComplexMatrix::lubksub(), oomph::CCComplexMatrix::lubksub(), oomph::DenseComplexMatrix::ludecompose(), oomph::CRComplexMatrix::ludecompose(), oomph::CCComplexMatrix::ludecompose(), oomph::ChannelWithLeafletDomain::macro_element_boundary(), oomph::TubeDomain::macro_element_boundary(), oomph::Domain::macro_element_pt(), oomph::QMacroElement< 2 >::macro_map(), oomph::QMacroElement< 3 >::macro_map(), oomph::MacroElementNodeUpdateChannelWithLeafletMesh< ELEMENT >::MacroElementNodeUpdateChannelWithLeafletMesh(), oomph::MacroElementNodeUpdateCollapsibleChannelMesh< ELEMENT >::MacroElementNodeUpdateCollapsibleChannelMesh(), oomph::MacroElementNodeUpdateRefineableFishMesh< ELEMENT >::MacroElementNodeUpdateRefineableFishMesh(), oomph::HangInfo::master_node_pt(), oomph::HangInfo::master_weight(), oomph::CRDoubleMatrix::matrix_reduction(), oomph::DenseDoubleMatrix::matrix_reduction(), oomph::CCDoubleMatrix::matrix_reduction(), oomph::DoubleVector::max(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::max_and_min_invariant_and_viscosity(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::max_and_min_invariant_and_viscosity(), oomph::TriangleMeshCurve::max_boundary_id(), oomph::HelmholtzMGPreconditioner< DIM >::maximum_edge_width(), oomph::BlockPreconditioner< CRDoubleMatrix >::mesh_pt(), oomph::HelmholtzMGPreconditioner< DIM >::mg_solve(), oomph::MGSolver< DIM >::mg_solve(), SamplePointContainer::min_and_max_coordinates(), NonRefineableBinArray::min_distance(), oomph::MinModLimiter::minmod(), oomph::MGSolver< DIM >::modify_restriction_matrices(), oomph::QElementBase::move_local_coord_back_into_element(), oomph::QHermiteElement< DIM-1 >::move_local_coord_back_into_element(), oomph::TElementBase::move_local_coord_back_into_element(), oomph::OcTree::mult_mat_mat(), oomph::OcTree::mult_mat_vect(), oomph::DiagonalComplexMatrix::multiply(), oomph::DenseComplexMatrix::multiply(), oomph::CRComplexMatrix::multiply(), oomph::CCComplexMatrix::multiply(), oomph::CRDoubleMatrix::multiply(), oomph::DenseDoubleMatrix::multiply(), oomph::CCDoubleMatrix::multiply(), oomph::DenseComplexMatrix::multiply_transpose(), oomph::CRComplexMatrix::multiply_transpose(), oomph::CCComplexMatrix::multiply_transpose(), oomph::CRDoubleMatrix::multiply_transpose(), oomph::DenseDoubleMatrix::multiply_transpose(), oomph::CCDoubleMatrix::multiply_transpose(), Anasazi::MultiVecTraits< double, oomph::DoubleMultiVector >::MvAddMv(), Anasazi::MultiVecTraits< double, oomph::DoubleMultiVector >::MvRandom(), Anasazi::MultiVecTraits< double, oomph::DoubleMultiVector >::MvScale(), Anasazi::MultiVecTraits< double, oomph::DoubleMultiVector >::MvTimesMatAddMv(), Anasazi::MultiVecTraits< double, oomph::DoubleMultiVector >::MvTransMv(), oomph::C1CurvedElementBase< NNODE_1D >::my_interpolated_u_normal(), oomph::C1CurvedElementBase< NNODE_1D >::my_interpolated_u_normal1(), oomph::BellElementBase< NNODE_1D >::my_interpolated_x(), oomph::BellElementBase< NNODE_1D >::myassemble_local_to_eulerian_jacobian2(), oomph::C1CurvedElementBase< NNODE_1D >::myassemble_local_to_eulerian_jacobian2(), NonRefineableBinArray::nbin(), oomph::Mesh::ndof_types(), oomph::BlockPreconditioner< CRDoubleMatrix >::ndof_types_in_mesh(), oomph::BDF< NSTEPS >::ndt(), oomph::DGFaceElement::neighbour_face_pt(), oomph::Problem::newton_solve(), oomph::BlockPreconditioner< CRDoubleMatrix >::nfine_grain_dof_types_in(), oomph::QHermiteElement< DIM-1 >::nnode_1d(), oomph::FiniteElement::nnode_1d(), oomph::Mesh::nodal_dimension(), oomph::AxisymFoepplvonKarmanEquations::nodal_index_fvk(), oomph::DisplacementBasedFoepplvonKarmanEquations::nodal_index_fvk(), oomph::FoepplvonKarmanEquations::nodal_index_fvk(), oomph::FiniteElement::nodal_local_eqn(), oomph::RefineableQElement< 3 >::node_created_by_neighbour(), oomph::RefineableQElement< 2 >::node_created_by_neighbour(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::node_created_by_neighbour(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::node_created_by_neighbour(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::node_created_by_son_of_neighbour(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::node_created_by_son_of_neighbour(), oomph::MacroElementNodeUpdateNode::node_update(), oomph::Mesh::node_update(), oomph::AlgebraicMesh::node_update(), oomph::DoubleVector::norm(), oomph::DoubleMultiVector::norm(), VorticityRecoveryHelpers::RecoveryHelper::npartial_derivative(), oomph::QSpectralElement< 1, NNODE_1D >::nplot_points(), oomph::QElement< 1, NNODE_1D >::nplot_points(), oomph::QSpectralElement< 2, NNODE_1D >::nplot_points(), oomph::QElement< 2, NNODE_1D >::nplot_points(), oomph::QSpectralElement< 3, NNODE_1D >::nplot_points(), oomph::QElement< 3, NNODE_1D >::nplot_points(), oomph::TElement< 2, NNODE_1D >::nplot_points(), oomph::TElement< 3, NNODE_1D >::nplot_points(), oomph::TElement< 2, NNODE_1D >::nplot_points_paraview(), oomph::TElement< 3, NNODE_1D >::nplot_points_paraview(), oomph::TetMeshBase::nregion_element(), oomph::TElement< 2, NNODE_1D >::nsub_elements_paraview(), oomph::AxisAlignedPMLElement< DIM >::nu(), oomph::DGScalarAdvectionFaceElement< ELEMENT >::numerical_flux(), oomph::DGEulerFaceElement< ELEMENT >::numerical_flux(), oomph::DGFaceElement::numerical_flux_at_knot(), oomph::VorticitySmootherElement< ELEMENT >::nvelocity_derivatives_to_recover(), oomph::TriangleMeshOpenCurve::nvertices(), oomph::VorticitySmootherElement< ELEMENT >::nvorticity_derivatives_to_recover(), oomph::ReflectedIntegral::nweight(), oomph::OcTreeForest::oc_edge_neigh_pt(), oomph::OcTreeForest::oc_face_neigh_pt(), oomph::RefineableQElement< 3 >::oc_hang_helper(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::oc_hang_helper(), oomph::OcTreeForest::octree_pt(), oomph::OneDimensionalLegendreDShape< NNODE_1D >::OneDimensionalLegendreDShape(), oomph::OneDimensionalLegendreShape< NNODE_1D >::OneDimensionalLegendreShape(), oomph::OneDimensionalModalDShape::OneDimensionalModalDShape(), oomph::OneDimensionalModalShape::OneDimensionalModalShape(), oomph::OneDLegendreDShapeParam::OneDLegendreDShapeParam(), oomph::OneDLegendreShapeParam::OneDLegendreShapeParam(), oomph::OomphLibException::OomphLibException(), oomph::QuadTreeForest::open_hanging_node_files(), oomph::OcTreeForest::open_hanging_node_files(), oomph::NonLinearElasticitySmoothMesh< ELEMENT >::operator()(), oomph::DiagonalComplexMatrix::operator()(), oomph::OutputModifier::operator()(), oomph::DoubleMultiVector::operator()(), oomph::SumOfMatrices::operator()(), oomph::LinearElasticitySmoothMesh< LINEAR_ELASTICITY_ELEMENT >::operator()(), oomph::PoissonSmoothMesh< POISSON_ELEMENT >::operator()(), oomph::DoubleVector::operator*=(), oomph::DoubleMultiVector::operator*=(), oomph::DoubleVector::operator+=(), oomph::DoubleMultiVector::operator+=(), oomph::DoubleVector::operator-=(), oomph::DoubleMultiVector::operator-=(), oomph::operator<<(), oomph::DenseMatrix< bool >::operator=(), oomph::RankThreeTensor< T >::operator=(), oomph::RankFourTensor< T >::operator=(), oomph::RankFiveTensor< T >::operator=(), oomph::DoubleVector::operator==(), oomph::LinearAlgebraDistribution::operator==(), oomph::DoubleMultiVector::operator==(), oomph::VectorMatrix< VALUE_TYPE >::operator[](), oomph::DoubleVector::operator[](), oomph::PeriodicOrbitEquations::orbit_output(), oomph::TriangleMeshParameters::outer_boundary_pt(), oomph::FaceElement::outer_unit_normal(), oomph::LineVisualiser::output(), oomph::BiharmonicEquations< DIM >::output(), oomph::YoungLaplaceEquations::output(), oomph::SteadyAxisymAdvectionDiffusionEquations::output(), oomph::PoissonFluxElement< ELEMENT >::output(), oomph::QHermiteElement< DIM-1 >::output(), oomph::DummyBrickElement::output(), oomph::DisplacementBasedFoepplvonKarmanEquations::output(), oomph::SurfactantTransportInterfaceElement::output(), oomph::SphericalAdvectionDiffusionEquations::output(), oomph::FoepplvonKarmanEquations::output(), oomph::LinearWaveEquations< DIM >::output(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::output(), oomph::BuoyantQCrouzeixRaviartElement< DIM >::output(), oomph::QSUPGAdvectionDiffusionElement< DIM, NNODE_1D >::output(), oomph::TimeHarmonicLinElastLoadedByHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::output(), oomph::FourierDecomposedHelmholtzEquations::output(), oomph::FluxTransportEquations< DIM >::output(), oomph::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::output(), oomph::FourierDecomposedTimeHarmonicLinElastLoadedByHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::output(), oomph::UnsteadyHeatEquations< DIM >::output(), oomph::EulerEquations< DIM >::output(), oomph::AxisymmetricLinearElasticityTractionElement< ELEMENT >::output(), oomph::SolidTractionElement< ELEMENT >::output(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::output(), oomph::TimeHarmonicLinearElasticityTractionElement< ELEMENT >::output(), oomph::PMLTimeHarmonicLinearElasticityTractionElement< ELEMENT >::output(), oomph::HelmholtzEquations< DIM >::output(), oomph::NavierStokesSurfaceDragTorqueElement< ELEMENT >::output(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::output(), oomph::PoissonEquations< DIM >::output(), oomph::AdvectionDiffusionEquations< DIM >::output(), oomph::AxisymmetricPoroelasticityTractionElement< POROELASTICITY_BULK_ELEMENT >::output(), oomph::AxisymAdvectionDiffusionEquations::output(), oomph::DoubleVector::output(), oomph::PMLHelmholtzEquationsBase< DIM >::output(), oomph::QMacroElement< 2 >::output(), oomph::WomersleyEquations< DIM >::output(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::output(), oomph::HermiteBeamElement::output(), oomph::LinearisedAxisymmetricNavierStokesEquations::output(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::output(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::output(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::output(), oomph::RefineableAdvectionDiffusionBoussinesqElement< AD_ELEMENT, NST_ELEMENT >::output(), oomph::AxisymmetricPVDEquations::output(), oomph::LinearElasticityEquations< DIM >::output(), oomph::QMacroElement< 3 >::output(), oomph::LinearisedNavierStokesEquations::output(), oomph::PolarNavierStokesEquations::output(), oomph::DarcyEquations< 2 >::output(), oomph::SphericalNavierStokesEquations::output(), oomph::PVDEquations< DIM >::output(), oomph::AxisymmetricLinearElasticityEquations::output(), oomph::QSpectralElement< 1, NNODE_1D >::output(), oomph::FourierDecomposedHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::output(), oomph::HelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::output(), oomph::DenseMatrix< bool >::output(), oomph::AxisymDiagHermitePVDElement::output(), oomph::FluidInterfaceElement::output(), oomph::CommandLineArgs::output(), oomph::TriangleMeshCurviLine::output(), oomph::PoroelasticityEquations< 2 >::output(), oomph::DoubleMultiVector::output(), oomph::QElement< 1, NNODE_1D >::output(), oomph::LinearisedFSIAxisymmetricNStNoSlipBCElementElement< FLUID_BULK_ELEMENT, SOLID_BULK_ELEMENT >::output(), oomph::QSpectralElement< 2, NNODE_1D >::output(), oomph::PMLHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::output(), oomph::AxisymmetricNavierStokesEquations::output(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::output(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::output(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::output(), oomph::TriangleMeshPolyLine::output(), oomph::ProjectableUnsteadyHeatElement< UNSTEADY_HEAT_ELEMENT >::output(), oomph::FSISolidTractionElement< ELEMENT, DIM >::output(), oomph::PVDEquationsWithPressure< DIM >::output(), oomph::NavierStokesEquations< DIM >::output(), oomph::QElement< 2, NNODE_1D >::output(), oomph::QSpectralElement< 3, NNODE_1D >::output(), oomph::FSILinearisedAxisymPoroelasticTractionElement< POROELASTICITY_BULK_ELEMENT, NAVIER_STOKES_BULK_ELEMENT >::output(), oomph::AdvectionDiffusionBoussinesqElement< AD_ELEMENT, NST_ELEMENT >::output(), oomph::SolidQHermiteElement< 2 >::output(), oomph::VorticitySmootherElement< ELEMENT >::output(), oomph::AxisymmetricPoroelasticityEquations::output(), oomph::AxisymmetricPVDEquationsWithPressure::output(), oomph::TriangleMeshClosedCurve::output(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::output(), oomph::QElement< 3, NNODE_1D >::output(), oomph::TElement< 1, NNODE_1D >::output(), oomph::Node::output(), oomph::TriangleMeshOpenCurve::output(), oomph::SolidQElement< 1, NNODE_1D >::output(), oomph::TElement< 2, NNODE_1D >::output(), oomph::SolidQElement< 2, NNODE_1D >::output(), oomph::SolidQElement< 3, NNODE_1D >::output(), oomph::FSIImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::output(), oomph::TElement< 3, NNODE_1D >::output(), oomph::WomersleyEquations< DIM >::output_3d(), oomph::VorticitySmootherElement< ELEMENT >::output_analytical_veloc_and_vorticity(), RefineableBinArray::output_bin_vertices(), NonRefineableBinArray::output_bin_vertices(), RefineableBinArray::output_bins(), NonRefineableBinArray::output_bins(), oomph::DiskLikeGeomObjectWithBoundaries::output_boundaries_and_triads(), oomph::TriangleMesh< ELEMENT >::output_boundary_coordinates(), oomph::ElementWithExternalElement::output_external_elements(), oomph::YoungLaplaceEquations::output_fct(), oomph::SteadyAxisymAdvectionDiffusionEquations::output_fct(), oomph::DisplacementBasedFoepplvonKarmanEquations::output_fct(), oomph::SphericalAdvectionDiffusionEquations::output_fct(), oomph::FoepplvonKarmanEquations::output_fct(), oomph::LinearWaveEquations< DIM >::output_fct(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::output_fct(), oomph::UnsteadyHeatEquations< DIM >::output_fct(), oomph::FourierDecomposedHelmholtzEquations::output_fct(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::output_fct(), oomph::PMLFourierDecomposedHelmholtzEquationsBase::output_fct(), oomph::BiharmonicEquations< DIM >::output_fct(), oomph::HelmholtzEquations< DIM >::output_fct(), oomph::PoissonEquations< DIM >::output_fct(), oomph::AdvectionDiffusionEquations< DIM >::output_fct(), oomph::AxisymAdvectionDiffusionEquations::output_fct(), oomph::WomersleyEquations< DIM >::output_fct(), oomph::PMLHelmholtzEquationsBase< DIM >::output_fct(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::output_fct(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::output_fct(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::output_fct(), oomph::LinearElasticityEquations< DIM >::output_fct(), oomph::DarcyEquations< 2 >::output_fct(), oomph::PolarNavierStokesEquations::output_fct(), oomph::AxisymmetricLinearElasticityEquations::output_fct(), oomph::SphericalNavierStokesEquations::output_fct(), oomph::PoroelasticityEquations< 2 >::output_fct(), oomph::AxisymmetricNavierStokesEquations::output_fct(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::output_fct(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::output_fct(), oomph::NavierStokesEquations< DIM >::output_fct(), oomph::AxisymmetricPoroelasticityEquations::output_fct(), oomph::Mesh::output_fct_paraview(), oomph::BiharmonicEquations< DIM >::output_fluid_velocity(), oomph::PMLHelmholtzEquationsBase< DIM >::output_imag(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::output_imag(), oomph::PMLHelmholtzEquationsBase< DIM >::output_imag_fct(), oomph::DoubleVector::output_local_values(), oomph::DoubleVector::output_local_values_with_offset(), oomph::Domain::output_macro_element_boundaries(), oomph::QMacroElement< 3 >::output_macro_element_boundaries(), RefineableBinArray::output_neighbouring_bins(), oomph::Mesh::output_paraview(), oomph::FiniteElement::output_paraview(), oomph::NavierStokesEquations< DIM >::output_pressure_advection_diffusion_robin_elements(), oomph::FourierDecomposedHelmholtzEquations::output_real(), oomph::HelmholtzEquations< DIM >::output_real(), oomph::PMLHelmholtzEquationsBase< DIM >::output_real(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::output_real(), oomph::FourierDecomposedHelmholtzEquations::output_real_fct(), oomph::PMLFourierDecomposedHelmholtzEquationsBase::output_real_fct(), oomph::HelmholtzEquations< DIM >::output_real_fct(), oomph::PMLHelmholtzEquationsBase< DIM >::output_real_fct(), oomph::VorticitySmootherElement< ELEMENT >::output_smoothed_vorticity(), oomph::PMLHelmholtzEquationsBase< DIM >::output_total_real(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::output_total_real(), oomph::LinearisedAxisymmetricNavierStokesEquations::output_veloc(), oomph::LinearisedNavierStokesEquations::output_veloc(), oomph::PolarNavierStokesEquations::output_veloc(), oomph::SphericalNavierStokesEquations::output_veloc(), oomph::AxisymmetricNavierStokesEquations::output_veloc(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::output_veloc(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::output_veloc(), oomph::NavierStokesEquations< DIM >::output_veloc(), oomph::SphericalNavierStokesEquations::output_vorticity(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::output_vorticity(), oomph::NavierStokesEquations< DIM >::output_vorticity(), oomph::DarcyEquations< 2 >::output_with_projected_flux(), oomph::FaceElement::output_zeta(), oomph::TreeBasedRefineableMeshBase::p_adapt_mesh(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::p_refine(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::p_refine(), oomph::Tree::p_refine_if_required(), oomph::Problem::p_refine_uniformly_aux(), oomph::Problem::parallel_sparse_assemble(), oomph::METIS::partition_distributed_mesh(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::PeriodicOrbitAssemblyHandler(), oomph::Data::pin_all(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::pin_all(), oomph::FpPressureAdvectionDiffusionProblem< ELEMENT >::pin_all_non_pressure_dofs(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::pin_all_non_pressure_dofs(), oomph::NavierStokesEquations< DIM >::pin_all_non_pressure_dofs(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::pin_all_spines(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::pin_elemental_redundant_nodal_pressure_dofs(), oomph::RefineableLinearisedQTaylorHoodElement::pin_elemental_redundant_nodal_pressure_dofs(), oomph::SegregatableFSIProblem::pin_fluid_dofs(), oomph::LinearisedQCrouzeixRaviartElement::pin_pressure_normalisation_dofs(), oomph::LinearisedQCrouzeixRaviartElement::pin_real_or_imag(), oomph::VorticitySmootherElement< ELEMENT >::pin_smoothed_vorticity(), oomph::SegregatableFSIProblem::pin_solid_dofs(), oomph::Legendre_functions_helper::plgndr1(), oomph::Legendre_functions_helper::plgndr2(), oomph::MGSolver< DIM >::plot(), oomph::PMLQuadMeshBase< ELEMENT >::pml_locate_zeta(), oomph::AxisAlignedPMLElement< DIM >::pml_transformation_jacobian(), oomph::PMLTimeHarmonicLinearElasticityTractionElement< ELEMENT >::PMLTimeHarmonicLinearElasticityTractionElement(), oomph::FiniteElement::point_output(), oomph::PoissonEquations< DIM >::point_output_data(), oomph::AxisymmetricNavierStokesEquations::point_output_data(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::point_output_data(), oomph::AxisymmetricPoroelasticityEquations::point_output_data(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::point_output_data(), oomph::NavierStokesEquations< DIM >::point_output_data(), oomph::SegregatableFSIProblem::pointwise_aitken_extrapolate(), oomph::TriangleMeshPolygon::polyline_pt(), oomph::TriangleMeshOpenCurve::polyline_pt(), oomph::MeshAsGeomObject::position(), oomph::PseudoBucklingRing::position(), oomph::Node::position(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::pre_build(), oomph::StorableShapeElementBase::pre_compute_d2shape_eulerian_at_knots(), oomph::StorableShapeSolidElementBase::pre_compute_d2shape_lagrangian_at_knots(), oomph::StorableShapeElementBase::pre_compute_d2shape_local_at_knots(), oomph::StorableShapeElementBase::pre_compute_dshape_eulerian_at_knots(), oomph::StorableShapeSolidElementBase::pre_compute_dshape_lagrangian_at_knots(), oomph::StorableShapeElementBase::pre_compute_dshape_local_at_knots(), oomph::MatrixBasedDiagPreconditioner::preconditioner_solve(), oomph::MatrixBasedLumpedPreconditioner< oomph::CRDoubleMatrix >::preconditioner_solve(), oomph::LagrangeEnforcedFlowPreconditioner::preconditioner_solve(), oomph::ILUZeroPreconditioner< CCDoubleMatrix >::preconditioner_solve(), oomph::ILUZeroPreconditioner< CRDoubleMatrix >::preconditioner_solve(), oomph::BlockDiagonalPreconditioner< MATRIX >::preconditioner_solve(), oomph::BlockTriangularPreconditioner< MATRIX >::preconditioner_solve(), oomph::PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld::preconditioner_solve(), oomph::PolarNavierStokesEquations::pressure_integral(), oomph::SphericalNavierStokesEquations::pressure_integral(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::pressure_integral(), oomph::AxisymmetricNavierStokesEquations::pressure_integral(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::pressure_integral(), oomph::NavierStokesEquations< DIM >::pressure_integral(), oomph::PVDEquationsBase< DIM >::prestress(), print_stacktrace(), BinArray::profile_get_neighbouring_bins_helper(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::project(), oomph::PseudoBucklingRingElement::PseudoBucklingRingElement(), oomph::AxisymmetricQCrouzeixRaviartElement::pshape_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::pshape_axi_nst(), oomph::AxisymmetricQTaylorHoodElement::pshape_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQTaylorHoodElement::pshape_axi_nst(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::pshape_linearised_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::pshape_linearised_axi_nst(), oomph::LinearisedQCrouzeixRaviartElement::pshape_linearised_nst(), oomph::LinearisedQTaylorHoodElement::pshape_linearised_nst(), oomph::PRefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::pshape_nst(), oomph::PRefineableQCrouzeixRaviartElement< DIM >::pshape_nst(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::pshape_nst(), oomph::QTaylorHoodElement< DIM >::pshape_nst(), oomph::PolarCrouzeixRaviartElement::pshape_pnst(), oomph::PolarTaylorHoodElement::pshape_pnst(), oomph::QSphericalCrouzeixRaviartElement::pshape_spherical_nst(), oomph::QSphericalTaylorHoodElement::pshape_spherical_nst(), oomph::RefineableQElement< 2 >::quad_hang_helper(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::quad_hang_helper(), oomph::QuadTreeForest::quad_neigh_pt(), oomph::QuadFromTriangleMesh< ELEMENT >::QuadFromTriangleMesh(), oomph::QuadTreeForest::quadtree_pt(), oomph::QuarterCircleSectorDomain::QuarterCircleSectorDomain(), oomph::QuarterPipeDomain::QuarterPipeDomain(), oomph::QuarterTubeDomain::QuarterTubeDomain(), oomph::QuarterTubeMesh< ELEMENT >::QuarterTubeMesh(), oomph::QuarterPipeDomain::r_B(), oomph::QuarterPipeDomain::r_D(), oomph::QuarterPipeDomain::r_F(), oomph::EighthSphereDomain::r_front_D(), oomph::EighthSphereDomain::r_front_F(), oomph::EighthSphereDomain::r_front_L(), oomph::QuarterPipeDomain::r_L(), oomph::QuarterPipeDomain::r_R(), oomph::EighthSphereDomain::r_right_B(), oomph::EighthSphereDomain::r_right_D(), oomph::EighthSphereDomain::r_right_F(), oomph::EighthSphereDomain::r_right_R(), oomph::EighthSphereDomain::r_right_U(), oomph::QuarterPipeDomain::r_U(), oomph::EighthSphereDomain::r_up_B(), oomph::EighthSphereDomain::r_up_F(), oomph::EighthSphereDomain::r_up_L(), oomph::EighthSphereDomain::r_up_U(), oomph::RankFiveTensor< T >::RankFiveTensor(), oomph::RankFourTensor< T >::RankFourTensor(), oomph::RankThreeTensor< T >::RankThreeTensor(), oomph::DShape::raw_direct_access(), oomph::RankFourTensor< T >::raw_direct_access(), oomph::RankFiveTensor< T >::raw_direct_access(), oomph::TriangleMesh< ELEMENT >::re_assign_initial_zeta_values_for_internal_boundary(), oomph::TriangleMesh< ELEMENT >::re_scale_re_assigned_initial_zeta_values_for_internal_boundary(), oomph::Data::read(), oomph::Mesh::read(), oomph::Problem::read(), oomph::Data::read_eqn_numbers_from_vector(), oomph::GeneralisedElement::read_internal_data_values_from_vector(), oomph::GeneralisedElement::read_internal_eqn_numbers_from_vector(), oomph::TreeBasedRefineableMeshBase::read_refinement(), oomph::TriangleHelper::read_triangulateio(), oomph::Data::read_values_from_vector(), oomph::Node::read_values_from_vector(), oomph::SolidNode::read_values_from_vector(), oomph::RefineableQSpectralElement< 3 >::rebuild_from_sons(), oomph::RefineableQSpectralElement< 2 >::rebuild_from_sons(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::rebuild_from_sons(), oomph::RefineableLinearisedAxisymmetricQCrouzeixRaviartElement::rebuild_from_sons(), oomph::RefineableLinearisedQCrouzeixRaviartElement::rebuild_from_sons(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::rebuild_from_sons(), oomph::SegregatableFSIProblem::rebuild_monolithic_mesh(), VorticitySmoother< ELEMENT >::recover_vorticity(), oomph::VorticitySmootherElement< ELEMENT >::recovered_dof_to_container_id(), oomph::RectangleWithHoleDomain::RectangleWithHoleDomain(), oomph::DoubleVector::redistribute(), oomph::DoubleMultiVector::redistribute(), oomph::CRDoubleMatrix::redistribute(), oomph::AlgebraicNode::ref_value(), oomph::TreeBasedRefineableMeshBase::refine_as_in_reference_mesh(), oomph::TreeBasedRefineableMeshBase::refine_base_mesh(), oomph::RefineableTriangleMesh< ELEMENT >::refine_boundary(), oomph::RefineableTriangleMesh< ELEMENT >::refine_boundary_constrained_by_target_area(), oomph::RefineableTriangleMesh< ELEMENT >::refine_shared_boundary_constrained_by_target_area(), oomph::Problem::refine_uniformly_aux(), oomph::RefineableSolidTractionElement< ELEMENT >::refineable_fill_in_contribution_to_residuals_solid_traction(), oomph::RefineableImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::refineable_fill_in_generic_contribution_to_residuals_displ_lagr_multiplier(), oomph::RefineableFSIImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::refineable_fill_in_generic_contribution_to_residuals_fsi_displ_lagr_multiplier(), oomph::RefineableNavierStokesTractionElement< ELEMENT >::refineable_fill_in_generic_residual_contribution_fluid_traction(), oomph::RefineableNavierStokesFluxControlElement< ELEMENT >::refineable_fill_in_generic_residual_contribution_fluid_traction(), RefineableBinArray::RefineableBinArray(), oomph::RefineableTetgenMesh< ELEMENT >::RefineableTetgenMesh(), oomph::RefineableTwoDAnnularMesh< ELEMENT >::RefineableTwoDAnnularMesh(), oomph::TetMeshBase::region_attribute(), oomph::UnstructuredTwoDMeshGeometryBase::region_attribute(), oomph::TetMeshBase::region_element_pt(), oomph::Data::remove_copy(), oomph::Problem::remove_duplicate_data(), oomph::HSL_MA42::reorder_elements(), oomph::Mesh::reorder_nodes(), oomph::DGFaceElement::report_info(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::reposition_spines(), oomph::CumulativeTimings::reset(), oomph::Timer::reset(), oomph::NonLinearElasticitySmoothMesh< ELEMENT >::reset(), oomph::RefineableTriangleMesh< ELEMENT >::reset_halo_haloed_scheme_helper(), oomph::SolidICProblem::reset_original_state(), oomph::FpPressureAdvectionDiffusionProblem< ELEMENT >::reset_pin_status(), oomph::NavierStokesSchurComplementPreconditioner::reset_pin_status(), oomph::ImmersedRigidBodyTriangleMeshPolygon::reset_reference_configuration(), oomph::DenseComplexMatrix::residual(), oomph::DoubleMatrixBase::residual(), oomph::CRComplexMatrix::residual(), oomph::CCComplexMatrix::residual(), oomph::ProjectableElement< TIME_HARMONIC_LINEAR_ELAST_ELEMENT >::residual_for_projection(), oomph::ProjectableDarcyElement< DARCY_ELEMENT >::residual_for_projection(), oomph::ProjectableAxisymmetricPoroelasticityElement< AXISYMMETRIC_POROELASTICITY_ELEMENT >::residual_for_projection(), oomph::HelmholtzMGPreconditioner< DIM >::residual_norm(), oomph::VectorMatrix< VALUE_TYPE >::resize(), oomph::Data::resize(), oomph::DenseMatrix< bool >::resize(), oomph::Node::resize(), oomph::RankThreeTensor< T >::resize(), oomph::RankFourTensor< T >::resize(), oomph::RankFiveTensor< T >::resize(), oomph::Mesh::resize_halo_nodes(), oomph::HSL_MA42::resolve(), oomph::RefineableTriangleMesh< ELEMENT >::restore_boundary_connections(), oomph::SegregatableFSIProblem::restore_fluid_dofs(), oomph::RefineableTriangleMesh< ELEMENT >::restore_polyline_connections_helper(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::restore_positions(), oomph::SegregatableFSIProblem::restore_solid_dofs(), oomph::BlockPreconditioner< CRDoubleMatrix >::return_block_vectors(), oomph::ChannelSpineMesh< ELEMENT >::right_element_pt(), oomph::ChannelSpineMesh< ELEMENT >::right_spine_pt(), oomph::OcTree::rotate(), oomph::SumOfMatrices::row_map_pt(), oomph::QElementBase::s_macro_ll(), oomph::QElementBase::s_macro_ur(), oomph::YoungLaplaceEquations::scalar_product(), oomph::YoungLaplaceEquations::scalar_times_vector(), oomph::AdvectionDiffusionEquations< DIM >::scalar_value_paraview(), oomph::AxisymAdvectionDiffusionEquations::scalar_value_paraview(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::scalar_value_paraview(), oomph::DenseComplexMatrix::scale(), oomph::TRaviartThomasDarcyElement< ORDER >::scale_basis(), oomph::TPoroelasticityElement< ORDER >::scale_basis(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::scale_basis(), oomph::Mesh::scale_mesh(), oomph::SecondInvariantHelper::second_invariant(), oomph::TriangleMesh< ELEMENT >::select_boundary_face_elements(), oomph::BinaryTree::self_test(), oomph::QuadTree::self_test(), oomph::OcTree::self_test(), oomph::BinaryTreeForest::self_test(), oomph::AlgebraicNode::self_test(), oomph::Data::self_test(), oomph::QuadTreeForest::self_test(), oomph::Mesh::self_test(), oomph::OcTreeForest::self_test(), oomph::GeneralisedElement::self_test(), oomph::FiniteElement::self_test(), oomph::RefineableTriangleMesh< ELEMENT >::send_and_receive_elements_nodes_info(), oomph::Multi_domain_functions::send_and_receive_located_info(), oomph::RefineableTriangleMesh< ELEMENT >::send_boundary_node_info_of_shared_nodes(), oomph::Problem::send_data_to_be_sent_during_load_balancing(), oomph::ElasticRectangularQuadMesh< ELEMENT >::set_boundary_coordinates(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::set_boundary_shape_geom_object_pt(), oomph::ContinuationStorageScheme::set_consistent_pinned_positions(), oomph::SpineMesh::set_consistent_pinned_spine_values_for_continuation(), oomph::ContinuationStorageScheme::set_consistent_pinned_values(), oomph::Problem::set_consistent_pinned_values_for_continuation(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::set_coordinate_for_projection(), oomph::BoundaryNodeBase::set_coordinates_on_boundary(), oomph::Problem::set_dofs(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::set_dofs_for_element(), oomph::DoubleVector::set_external_values(), oomph::Problem::set_first_and_last_element_for_assembly(), oomph::Spine::set_geom_data_pt(), oomph::Spine::set_geom_object_pt(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::set_lagrangian_coordinate_for_projection(), oomph::QElementBase::set_macro_elem_pt(), oomph::HangInfo::set_master_node_pt(), oomph::BlockPreconditioner< CRDoubleMatrix >::set_mesh(), oomph::FiniteElement::set_n_node(), oomph::SolidICProblem::set_newmark_initial_condition_consistently(), oomph::MacroElementNodeUpdateElement< ELEMENT >::set_node_update_info(), oomph::C1CurvedElementShape< 2, NNODE_1D >::set_of_value(), oomph::Problem::set_pinned_values_to_zero(), oomph::TriangleMeshCurve::set_polyline_refinement_tolerance(), oomph::TriangleMeshCurve::set_polyline_unrefinement_tolerance(), oomph::HermiteQuadMesh< ELEMENT >::set_position_of_boundary_node(), oomph::HermiteQuadMesh< ELEMENT >::set_position_of_node(), oomph::HelmholtzMGPreconditioner< DIM >::set_restriction_matrices_as_interpolation_transposes(), oomph::MGSolver< DIM >::set_restriction_matrices_as_interpolation_transposes(), oomph::MGSolver< DIM >::set_self_test_vector(), oomph::BiharmonicProblem< DIM >::set_source_function(), oomph::SpineMesh::set_spine_time_stepper(), oomph::GeneralPurposeBlockPreconditioner< MATRIX >::set_subsidiary_preconditioner_pt(), oomph::TriangleMeshParameters::set_target_area_for_region(), oomph::Data::set_time_stepper(), oomph::Problem::set_timestepper_for_all_data(), oomph::PeriodicOrbitEquations::set_timestepper_weights(), oomph::Data::set_value(), oomph::GeneralElasticityTensor::set_value(), oomph::VolumeConstraintBoundingElement::set_volume_constraint_element(), oomph::BDF< NSTEPS >::set_weights(), oomph::Steady< 0 >::set_weights(), oomph::NewmarkBDF< NSTEPS >::set_weights(), Anasazi::MultiVecTraits< double, oomph::DoubleMultiVector >::SetBlock(), oomph::MatrixBasedDiagPreconditioner::setup(), oomph::PseudoElasticFSIPreconditioner::setup(), oomph::MatrixBasedLumpedPreconditioner< oomph::CRDoubleMatrix >::setup(), oomph::PseudoElasticPreconditioner::setup(), oomph::FSIPreconditioner::setup(), oomph::PressureBasedSolidLSCPreconditioner::setup(), oomph::ILUZeroPreconditioner< CCDoubleMatrix >::setup(), oomph::ILUZeroPreconditioner< CRDoubleMatrix >::setup(), oomph::PseudoElasticPreconditionerOld::setup(), oomph::BlockDiagonalPreconditioner< MATRIX >::setup(), oomph::BlockTriangularPreconditioner< MATRIX >::setup(), oomph::PseudoElasticPreconditionerSubsidiaryPreconditionerOld::setup(), oomph::SimpleFSIPreconditioner< MATRIX >::setup(), oomph::LineVisualiser::setup(), oomph::NavierStokesSchurComplementPreconditioner::setup(), oomph::AlgebraicCylinderWithFlagMesh< ELEMENT >::setup_algebraic_node_update(), oomph::AlgebraicElementBase::setup_algebraic_node_update(), oomph::XdaTetMesh< ELEMENT >::setup_boundary_coordinates(), oomph::UnstructuredTwoDMeshGeometryBase::setup_boundary_coordinates(), oomph::QuadMeshBase::setup_boundary_element_info(), oomph::TriangleMeshBase::setup_boundary_element_info(), oomph::BrickMeshBase::setup_boundary_element_info(), oomph::HermiteQuadMesh< ELEMENT >::setup_boundary_element_info(), oomph::TetMeshBase::setup_boundary_element_info(), oomph::Multi_domain_functions::setup_bulk_elements_adjacent_to_face_mesh(), oomph::HelmholtzMGPreconditioner< DIM >::setup_coarsest_level_structures(), oomph::RefineableQElement< 3 >::setup_father_bounds(), oomph::LineVisualiser::setup_from_file(), oomph::FourierDecomposedHelmholtzDtNMesh< ELEMENT >::setup_gamma(), oomph::HelmholtzDtNMesh< ELEMENT >::setup_gamma(), oomph::HelmholtzMGPreconditioner< DIM >::setup_interpolation_matrices(), oomph::MGSolver< DIM >::setup_interpolation_matrices(), oomph::MacroElementNodeUpdateRefineableQuarterTubeMesh< ELEMENT >::setup_macro_element_node_update(), oomph::MacroElementNodeUpdateRefineableQuarterCircleSectorMesh< ELEMENT >::setup_macro_element_node_update(), oomph::HelmholtzMGPreconditioner< DIM >::setup_mg_structures(), oomph::MGSolver< DIM >::setup_mg_structures(), SamplePointContainer::setup_min_and_max_coordinates(), oomph::Multi_domain_functions::setup_multi_domain_interaction(), oomph::DGFaceElement::setup_neighbour_info(), oomph::RefineableBrickMesh< ELEMENT >::setup_octree_forest(), oomph::SolidICProblem::setup_problem(), oomph::RefineableQuadMesh< ELEMENT >::setup_quadtree_forest(), oomph::SegregatableFSIProblem::setup_segregated_solver(), oomph::HelmholtzMGPreconditioner< DIM >::setup_smoothers(), oomph::MGSolver< DIM >::setup_smoothers(), oomph::OcTree::setup_static_data(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::shape(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::shape(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::shape(), oomph::QSpectralElement< 1, NNODE_1D >::shape(), oomph::QElement< 1, NNODE_1D >::shape(), oomph::ClampedHermiteShellBoundaryConditionElement::shape(), oomph::QSpectralElement< 2, NNODE_1D >::shape(), oomph::QElement< 2, NNODE_1D >::shape(), oomph::QSpectralElement< 3, NNODE_1D >::shape(), oomph::QElement< 3, NNODE_1D >::shape(), oomph::AdvectionDiffusionFluxElement< ELEMENT >::shape_and_test(), oomph::UnsteadyHeatFluxElement< ELEMENT >::shape_and_test(), oomph::LinearWaveFluxElement< ELEMENT >::shape_and_test(), oomph::FourierDecomposedHelmholtzFluxElement< ELEMENT >::shape_and_test(), oomph::HelmholtzFluxElement< ELEMENT >::shape_and_test(), oomph::PMLFourierDecomposedHelmholtzFluxElement< ELEMENT >::shape_and_test(), oomph::PoissonFluxElement< ELEMENT >::shape_and_test(), oomph::FourierDecomposedHelmholtzBCElementBase< ELEMENT >::shape_and_test(), oomph::FourierDecomposedHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::shape_and_test(), oomph::HelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::shape_and_test(), oomph::PMLFourierDecomposedHelmholtzPowerMonitorElement< ELEMENT >::shape_and_test(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::shape_and_test(), oomph::PMLHelmholtzFluxElement< ELEMENT >::shape_and_test(), oomph::SteadyAxisymAdvectionDiffusionFluxElement< ELEMENT >::shape_and_test(), oomph::LinearisedFSIAxisymmetricNStNoSlipBCElementElement< FLUID_BULK_ELEMENT, SOLID_BULK_ELEMENT >::shape_and_test(), oomph::SphericalAdvectionDiffusionFluxElement< ELEMENT >::shape_and_test(), oomph::PMLHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::shape_and_test(), oomph::AxisymAdvectionDiffusionFluxElement< ELEMENT >::shape_and_test(), oomph::PolarStressIntegralElement< ELEMENT >::shape_and_test_at_knot(), oomph::PolarNavierStokesTractionElement< ELEMENT >::shape_and_test_at_knot(), oomph::NavierStokesTractionElement< ELEMENT >::shape_and_test_at_knot(), oomph::AdvectionDiffusionFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::HelmholtzFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::FourierDecomposedHelmholtzFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::PMLFourierDecomposedHelmholtzFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::PoissonFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::NavierStokesFluxControlElement< ELEMENT >::shape_and_test_at_knot(), oomph::FourierDecomposedHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::shape_and_test_at_knot(), oomph::HelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::shape_and_test_at_knot(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::shape_and_test_at_knot(), oomph::PMLHelmholtzFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::SteadyAxisymAdvectionDiffusionFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::LinearisedFSIAxisymmetricNStNoSlipBCElementElement< FLUID_BULK_ELEMENT, SOLID_BULK_ELEMENT >::shape_and_test_at_knot(), oomph::SphericalAdvectionDiffusionFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::PMLHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::shape_and_test_at_knot(), oomph::AxisymAdvectionDiffusionFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::shape_and_test_at_knot(), oomph::FiniteElement::shape_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::shape_at_knot_geom(), oomph::TRaviartThomasDarcyElement< ORDER >::shape_basis_test_local_at_knot(), oomph::TPoroelasticityElement< ORDER >::shape_basis_test_local_at_knot(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::shape_basis_test_local_at_knot(), oomph::ShapeWithDeepCopy::ShapeWithDeepCopy(), oomph::TriangleMesh< ELEMENT >::shared_boundaries_ids(), oomph::TriangleMesh< ELEMENT >::shared_boundary_polyline_pt(), oomph::Time::shift_dt(), oomph::IMRBase::shift_time_positions(), oomph::Steady< 0 >::shift_time_positions(), oomph::Newmark< NSTEPS >::shift_time_positions(), oomph::NewmarkBDF< NSTEPS >::shift_time_positions(), oomph::BDF< NSTEPS >::shift_time_positions(), oomph::NewmarkBDF< NSTEPS >::shift_time_values(), oomph::WomersleyImpedanceTubeBase< WOMERSLEY_ELEMENT, DIM >::shift_time_values(), oomph::SimpleCubicScaffoldTetMesh::SimpleCubicScaffoldTetMesh(), oomph::SimpleRectangularQuadMesh< ELEMENT >::SimpleRectangularQuadMesh(), oomph::SimpleRectangularTriMesh< ELEMENT >::SimpleRectangularTriMesh(), oomph::DGElement::slope_limit(), oomph::RefineableTriangleMesh< ELEMENT >::snap_nodes_onto_boundary(), oomph::TetMeshBase::snap_nodes_onto_geometric_objects(), oomph::UnstructuredTwoDMeshGeometryBase::snap_nodes_onto_geometric_objects(), oomph::TetMeshBase::snap_to_quadratic_surface(), oomph::AxisymmetricPoroelasticityEquations::solid_body_force(), oomph::QPVDElementWithContinuousPressure< DIM >::solid_pshape(), oomph::AxisymmetricPVDEquationsWithPressure::solid_pshape_at_knot(), oomph::PVDEquationsWithPressure< DIM >::solid_pshape_at_knot(), oomph::SolidMesh::SolidMesh(), oomph::HSL_MA42::solve(), oomph::BlockHopfLinearSolver::solve(), oomph::HelmholtzGMRESMG< MATRIX >::solve(), oomph::HelmholtzFGMRESMG< MATRIX >::solve(), oomph::ARPACK::solve_eigenproblem(), oomph::LAPACK_QZ::solve_eigenproblem(), oomph::ANASAZI::solve_eigenproblem(), oomph::Problem::solve_eigenproblem(), oomph::BlockHopfLinearSolver::solve_for_two_rhs(), oomph::CG< MATRIX >::solve_helper(), oomph::BiCGStab< MATRIX >::solve_helper(), oomph::GS< MATRIX >::solve_helper(), oomph::GS< CRDoubleMatrix >::solve_helper(), oomph::DampedJacobi< MATRIX >::solve_helper(), oomph::GMRES< MATRIX >::solve_helper(), oomph::HelmholtzGMRESMG< MATRIX >::solve_helper(), oomph::HelmholtzFGMRESMG< MATRIX >::solve_helper(), oomph::CRDoubleMatrix::sort_entries(), oomph::RefineableTriangleMesh< ELEMENT >::sort_nodes_on_shared_boundaries(), oomph::TriangleMesh< ELEMENT >::sort_polylines_helper(), oomph::DarcyEquations< 2 >::source(), oomph::PolarNavierStokesEquations::source_fct_pt(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_lists(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_maps(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_two_arrays(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_two_vectors(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_vectors_of_pairs(), oomph::SumOfMatrices::sparse_indexed_output_helper(), oomph::DenseMatrix< bool >::sparse_indexed_output_helper(), oomph::CRMatrix< std::complex< double > >::sparse_indexed_output_helper(), oomph::CRDoubleMatrix::sparse_indexed_output_with_offset(), oomph::SparseMatrix< double, CCMatrix< double > >::SparseMatrix(), oomph::SpectralElement::spectral_data_pt(), oomph::Spine::Spine(), oomph::SpineMesh::spine_pt(), oomph::SpineUpdateFluidInterfaceElement< FluidInterfaceElement, LineDerivatives, ELEMENT >::SpineUpdateFluidInterfaceElement(), oomph::RefineableElement::split(), oomph::DoubleVectorHelpers::split(), oomph::TetMeshBase::split_elements_in_corners(), oomph::Tree::split_if_required(), oomph::DoubleVectorHelpers::split_without_communication(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::square_of_l2_norm_of_error(), oomph::CumulativeTimings::start(), oomph::Timer::start(), oomph::Problem::steady_newton_solve(), oomph::SegregatableFSIProblem::steady_segregated_solve(), oomph::Tree::stick_all_tree_nodes_into_vector(), oomph::TreeForest::stick_all_tree_nodes_into_vector(), oomph::Tree::stick_leaves_into_vector(), oomph::TreeForest::stick_leaves_into_vector(), oomph::QuadTree::stick_neighbouring_leaves_into_vector(), oomph::Problem::store_current_dof_values(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::store_positions(), oomph::SegregatableFSIProblem::store_solid_dofs(), oomph::LinearisedAxisymmetricNavierStokesEquations::strain_rate(), oomph::PolarNavierStokesEquations::strain_rate(), oomph::SphericalNavierStokesEquations::strain_rate(), oomph::LinearisedNavierStokesEquations::strain_rate(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::strain_rate(), oomph::AxisymmetricNavierStokesEquations::strain_rate(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::strain_rate(), oomph::NavierStokesEquations< DIM >::strain_rate(), oomph::PolarNavierStokesEquations::strain_rate_by_r(), oomph::Global_string_for_annotation::string(), oomph::GeneralPurposeBlockPreconditioner< MATRIX >::subsidiary_preconditioner_pt(), oomph::DoubleVectorWithHaloEntries::sum_all_halo_and_haloed_values(), superlu(), superlu_complex(), superlu_dist_distributed_matrix(), superlu_dist_global_matrix(), oomph::RefineableTriangleMesh< ELEMENT >::surface_remesh_for_inner_hole_boundaries(), oomph::DoubleVectorWithHaloEntries::synchronise(), oomph::Problem::synchronise_eqn_numbers(), oomph::TreeBasedRefineableMeshBase::synchronise_hanging_nodes(), oomph::Mesh::synchronise_shared_nodes(), oomph::RefineableTriangleMesh< ELEMENT >::synchronize_shared_boundary_connections(), oomph::TElement< 2, NNODE_1D >::tecplot_zone_string(), oomph::IMRBase::temporal_error_in_position(), oomph::BellElementBase< NNODE_1D >::test_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::test_at_knot(), oomph::TetgenMesh< ELEMENT >::TetgenMesh(), oomph::TetgenScaffoldMesh::TetgenScaffoldMesh(), oomph::ThinLayerBrickOnTetMesh< ELEMENT >::ThinLayerBrickOnTetMesh(), oomph::Time::time(), oomph::Problem::time_stepper_pt(), oomph::TimeHarmonicFourierDecomposedLinearElasticityTractionElement< ELEMENT >::TimeHarmonicFourierDecomposedLinearElasticityTractionElement(), oomph::TimeHarmonicLinearElasticityTractionElement< ELEMENT >::TimeHarmonicLinearElasticityTractionElement(), oomph::TimeHarmonicLinElastLoadedByHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::TimeHarmonicLinElastLoadedByHelmholtzPressureBCElement(), oomph::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement(), oomph::LowStorageRungeKutta< ORDER >::timestep(), RefineableBinArray::total_number_of_sample_points_computed_recursively(), oomph::AxisymmetricNavierStokesEquations::traction(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::traction(), oomph::DarcyEquations< 2 >::transform_basis(), oomph::PoroelasticityEquations< 2 >::transform_basis(), oomph::AxisymmetricPoroelasticityEquations::transform_basis(), oomph::FiniteElement::transform_derivatives(), oomph::FiniteElement::transform_second_derivatives_template(), oomph::Tree::traverse_all(), oomph::Tree::traverse_all_but_leaves(), oomph::Tree::traverse_leaves(), oomph::TreeForest::tree_pt(), oomph::TriangleMesh< ELEMENT >::TriangleMesh(), oomph::TriangleMeshClosedCurve::TriangleMeshClosedCurve(), oomph::TriangleMeshOpenCurve::TriangleMeshOpenCurve(), oomph::TriangleMeshPolygon::TriangleMeshPolygon(), oomph::TriangleMeshPolyLine::TriangleMeshPolyLine(), oomph::TriangleScaffoldMesh::TriangleScaffoldMesh(), oomph::TubeDomain::TubeDomain(), oomph::TubeMesh< ELEMENT >::TubeMesh(), oomph::YoungLaplaceEquations::two_norm(), oomph::FluidInterfaceElement::u(), oomph::AxisymmetricNavierStokesEquations::u_index_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::u_index_axi_nst(), oomph::AxisymmetricLinearElasticityEquationsBase::u_index_axisymmetric_linear_elasticity(), oomph::FluxTransportEquations< DIM >::u_index_flux_transport(), oomph::LinearElasticityEquationsBase< DIM >::u_index_linear_elasticity(), oomph::LinearisedAxisymmetricNavierStokesEquations::u_index_linearised_axi_nst(), oomph::LinearisedNavierStokesEquations::u_index_linearised_nst(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::u_index_nst(), oomph::NavierStokesEquations< DIM >::u_index_nst(), oomph::PolarNavierStokesEquations::u_index_pnst(), oomph::SphericalNavierStokesEquations::u_index_spherical_nst(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquationsBase::u_index_time_harmonic_fourier_decomposed_linear_elasticity(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::u_index_time_harmonic_linear_elasticity(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM, PML_ELEMENT >::u_index_time_harmonic_linear_elasticity(), oomph::Data::unconstrain_all(), oomph::SegregatableFSIProblem::under_relax_solid(), oomph::Data::unpin_all(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::unpin_all(), oomph::RefineableLinearisedAxisymmetricQCrouzeixRaviartElement::unpin_elemental_pressure_dofs(), oomph::RefineableLinearisedQCrouzeixRaviartElement::unpin_elemental_pressure_dofs(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::unpin_elemental_pressure_dofs(), oomph::RefineableLinearisedQTaylorHoodElement::unpin_elemental_pressure_dofs(), oomph::LinearisedQCrouzeixRaviartElement::unpin_real_or_imag(), oomph::RefineableTriangleMesh< ELEMENT >::unrefine_boundary(), oomph::RefineableTriangleMesh< ELEMENT >::unrefine_boundary_constrained_by_target_area(), oomph::RefineableTriangleMesh< ELEMENT >::unrefine_shared_boundary_constrained_by_target_area(), oomph::Problem::unsteady_newton_solve(), oomph::SegregatableFSIProblem::unsteady_segregated_solve(), oomph::ComplexGMRES< MATRIX >::update(), oomph::GMRES< MATRIX >::update(), oomph::HelmholtzGMRESMG< MATRIX >::update(), oomph::HelmholtzFGMRESMG< MATRIX >::update(), oomph::TriangleMesh< ELEMENT >::update_holes_information_helper(), oomph::AlgebraicRefineableQuarterCircleSectorMesh< ELEMENT >::update_node_update(), oomph::AlgebraicRefineableQuarterTubeMesh< ELEMENT >::update_node_update(), oomph::RefineableTriangleMesh< ELEMENT >::update_open_curve_after_restart(), oomph::RefineableTriangleMesh< ELEMENT >::update_open_curve_using_elements_area(), oomph::RefineableTriangleMesh< ELEMENT >::update_open_curve_using_face_mesh(), oomph::LineVisualiser::update_plot_points_coordinates(), oomph::RefineableTriangleMesh< ELEMENT >::update_polygon_after_restart(), oomph::RefineableTriangleMesh< ELEMENT >::update_polygon_using_elements_area(), oomph::RefineableTriangleMesh< ELEMENT >::update_polygon_using_face_mesh(), oomph::RefineableTriangleMesh< ELEMENT >::update_polyline_representation_from_restart(), oomph::RefineableTriangleMesh< ELEMENT >::update_shared_curve_after_restart(), oomph::TwoLayerSpineMesh< ELEMENT >::upper_layer_element_pt(), oomph::Data::value(), oomph::Node::value(), oomph::Data::value_pt(), oomph::DoubleMultiVector::values(), oomph::YoungLaplaceEquations::vector_sum(), oomph::TriangleMeshPolyLine::vertex_coordinate(), oomph::VorticitySmootherElement< ELEMENT >::vorticity_and_its_derivs(), oomph::Gauss< 1, 2 >::weight(), oomph::Gauss< 1, 3 >::weight(), oomph::Gauss< 1, 4 >::weight(), oomph::Gauss< 2, 2 >::weight(), oomph::Gauss< 2, 3 >::weight(), oomph::Gauss< 2, 4 >::weight(), oomph::Gauss< 3, 2 >::weight(), oomph::Gauss< 3, 3 >::weight(), oomph::Gauss< 3, 4 >::weight(), oomph::TGauss< 1, 2 >::weight(), oomph::TGauss< 1, 3 >::weight(), oomph::TGauss< 1, 4 >::weight(), oomph::TGauss< 1, 5 >::weight(), oomph::TGauss< 2, 2 >::weight(), oomph::TGauss< 2, 3 >::weight(), oomph::TGauss< 2, 4 >::weight(), oomph::TGauss< 2, 13 >::weight(), oomph::TGauss< 2, 9 >::weight(), oomph::TGauss< 2, 16 >::weight(), oomph::TGauss< 2, 5 >::weight(), oomph::TGauss< 3, 2 >::weight(), oomph::TGauss< 3, 3 >::weight(), oomph::TGauss< 3, 5 >::weight(), oomph::GaussLobattoLegendre< 1, NPTS_1D >::weight(), oomph::GaussLobattoLegendre< 2, NPTS_1D >::weight(), oomph::GaussLobattoLegendre< 3, NPTS_1D >::weight(), oomph::GaussLegendre< 1, NPTS_1D >::weight(), oomph::GaussLegendre< 2, NPTS_1D >::weight(), oomph::GaussLegendre< 3, NPTS_1D >::weight(), oomph::RuntimeCalculatedGaussLegendre::weight(), oomph::WomersleyMesh< WOMERSLEY_ELEMENT >::WomersleyMesh(), oomph::WomersleyProblem< WOMERSLEY_ELEMENT, DIM >::WomersleyProblem(), oomph::GmshTetScaffoldMesh::write_geo_file(), oomph::QElement< 1, NNODE_1D >::write_paraview_offsets(), oomph::QElement< 2, NNODE_1D >::write_paraview_offsets(), oomph::QElement< 3, NNODE_1D >::write_paraview_offsets(), oomph::TElement< 1, NNODE_1D >::write_paraview_offsets(), oomph::TElement< 2, NNODE_1D >::write_paraview_offsets(), oomph::TElement< 3, NNODE_1D >::write_paraview_offsets(), oomph::QElement< 1, NNODE_1D >::write_paraview_output_offset_information(), oomph::QElement< 2, NNODE_1D >::write_paraview_output_offset_information(), oomph::QElement< 3, NNODE_1D >::write_paraview_output_offset_information(), oomph::TElement< 1, NNODE_1D >::write_paraview_output_offset_information(), oomph::TElement< 2, NNODE_1D >::write_paraview_output_offset_information(), oomph::TElement< 3, NNODE_1D >::write_paraview_output_offset_information(), oomph::QElement< 1, NNODE_1D >::write_paraview_type(), oomph::QElement< 2, NNODE_1D >::write_paraview_type(), oomph::QElement< 3, NNODE_1D >::write_paraview_type(), oomph::TElement< 1, NNODE_1D >::write_paraview_type(), oomph::TElement< 2, NNODE_1D >::write_paraview_type(), oomph::TElement< 3, NNODE_1D >::write_paraview_type(), oomph::TElement< 2, NNODE_1D >::write_tecplot_zone_footer(), oomph::TElement< 3, NNODE_1D >::write_tecplot_zone_footer(), oomph::TriangleHelper::write_triangulateio_to_polyfile(), oomph::TetMeshVertex::x(), oomph::Node::x(), oomph::Node::x_position_pt(), oomph::Node::x_pt(), oomph::XdaTetMesh< ELEMENT >::XdaTetMesh(), oomph::SolidNode::xi(), oomph::AxisymmetricNavierStokesTractionElementHelper::Zero_traction_fct(), oomph::PMLTimeHarmonicLinearElasticityTractionElementHelper::Zero_traction_fct(), oomph::SolidTractionElementHelper::Zero_traction_fct(), oomph::TimeHarmonicLinearElasticityTractionElementHelper::Zero_traction_fct(), oomph::TimeHarmonicFourierDecomposedLinearElasticityTractionElementHelper::Zero_traction_fct(), oomph::LinearElasticityTractionElementHelper::Zero_traction_fct(), oomph::PoroelasticityFaceElementHelper::Zero_traction_fct(), oomph::AxisymmetricPoroelasticityTractionElementHelper::Zero_traction_fct(), oomph::AxisymmetricLinearElasticityTractionElementHelper::Zero_traction_fct(), oomph::KirchhoffLoveShellEquations::Zero_traction_fct(), oomph::KirchhoffLoveBeamEquations::Zero_traction_fct(), oomph::GenericLagrangeInterpolatedProjectableElement< ELEMENT >::zeta_nodal(), oomph::FaceElement::zeta_nodal(), oomph::FreeStandingFaceElement< ELEMENT >::zeta_nodal(), oomph::AnnularDomain::~AnnularDomain(), oomph::BoundaryNode< NODE_TYPE >::~BoundaryNode(), CGALSamplePointContainer::~CGALSamplePointContainer(), oomph::ChannelWithLeafletDomain::~ChannelWithLeafletDomain(), oomph::Circle::~Circle(), oomph::CollapsibleChannelDomain::~CollapsibleChannelDomain(), oomph::ComplexMatrixBase::~ComplexMatrixBase(), oomph::CylinderWithFlagDomain::~CylinderWithFlagDomain(), oomph::Data::~Data(), oomph::DoubleMatrixBase::~DoubleMatrixBase(), oomph::EighthSphereDomain::~EighthSphereDomain(), oomph::FishDomain::~FishDomain(), oomph::FullCircleDomain::~FullCircleDomain(), oomph::Integral::~Integral(), oomph::Mesh::~Mesh(), oomph::MinModLimiter::~MinModLimiter(), oomph::QuarterCircleSectorDomain::~QuarterCircleSectorDomain(), oomph::QuarterPipeDomain::~QuarterPipeDomain(), oomph::QuarterTubeDomain::~QuarterTubeDomain(), oomph::RectangleWithHoleDomain::~RectangleWithHoleDomain(), RefineableBin::~RefineableBin(), RefineableBinArray::~RefineableBinArray(), oomph::SpineMesh::~SpineMesh(), oomph::Tree::~Tree(), oomph::TreeForest::~TreeForest(), and oomph::TubeDomain::~TubeDomain().

num_term

int num_term

Definition at line 646 of file cfortran.h.

Referenced by for().

s

return s

Definition at line 572 of file cfortran.h.

Referenced by oomph::RefineableTetgenMesh< ELEMENT >::adapt(), oomph::RefineableGmshTetMesh< ELEMENT >::adapt(), oomph::RefineableTriangleMesh< ELEMENT >::adapt(), oomph::TreeBasedRefineableMeshBase::adapt_mesh(), oomph::UnstructuredTwoDMeshGeometryBase::add_boundary_segment_node(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::add_element_contribution_to_aux_integral(), RefineableBinArray::add_sample_point(), oomph::AdvectionDiffusionBoussinesqElement< AD_ELEMENT, NST_ELEMENT >::AdvectionDiffusionBoussinesqElement(), oomph::AlgebraicFSIDrivenCavityMesh< ELEMENT >::algebraic_node_update(), oomph::AlgebraicCollapsibleChannelMesh< ELEMENT >::algebraic_node_update(), oomph::RefineableTriangleMesh< ELEMENT >::apply_max_length_constraint(), oomph::CircularCylindricalShellMesh< ELEMENT >::assign_undeformed_positions(), oomph::Multi_domain_functions::aux_setup_multi_domain_interaction(), oomph::QuarterPipeDomain::axial_spacing_fct(), oomph::QuarterTubeDomain::axial_spacing_fct(), oomph::AxisAlignedPMLElement< DIM >::AxisAlignedPMLElement(), oomph::BellElementBase< NNODE_1D >::basis_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::basis_at_knot_curve(), oomph::C1CurvedElementBase< NNODE_1D >::basis_at_knot_straight(), oomph::BellElementBase< NNODE_1D >::basis_c0_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::basis_c0_at_knot(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::body_force_fct_pt(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM, PML_ELEMENT >::body_force_fct_pt(), oomph::TriangleMesh< ELEMENT >::boundary_segment_node_pt(), oomph::RefineableQElement< 3 >::build(), oomph::RefineableQElement< 2 >::build(), oomph::RefineableSolidQElement< 2 >::build(), oomph::RefineableSolidQElement< 3 >::build(), oomph::SimpleCubicTetMesh< ELEMENT >::build_from_scaffold(), oomph::QuadFromTriangleMesh< ELEMENT >::build_from_scaffold(), oomph::TetgenMesh< ELEMENT >::build_from_scaffold(), oomph::TriangleMesh< ELEMENT >::build_from_scaffold(), oomph::GmshTetMesh< ELEMENT >::build_from_scaffold(), oomph::FishMesh< ELEMENT >::build_mesh(), oomph::BrickFromTetMesh< ELEMENT >::build_mesh(), oomph::IsotropicStrainEnergyFunctionConstitutiveLaw::calculate_second_piola_kirchhoff_stress(), oomph::RefineableQElement< 3 >::check_integrity(), oomph::RefineableQElement< 2 >::check_integrity(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::check_integrity(), oomph::Mesh::check_inverted_elements(), oomph::ComplexGMRES< MATRIX >::complex_solve_helper(), oomph::HelmholtzBCElementBase< ELEMENT >::compute_contribution_to_fourier_components(), oomph::PRefineableQLinearElasticityElement< DIM >::compute_energy_error(), oomph::PRefineableQPoissonElement< DIM >::compute_energy_error(), oomph::ScalarAdvectionEquations< DIM >::compute_error(), oomph::EulerEquations< DIM >::compute_error(), oomph::YoungLaplaceEquations::compute_error(), oomph::SteadyAxisymAdvectionDiffusionEquations::compute_error(), oomph::AxisymFoepplvonKarmanEquations::compute_error(), oomph::SphericalAdvectionDiffusionEquations::compute_error(), oomph::DisplacementBasedFoepplvonKarmanEquations::compute_error(), oomph::LinearWaveEquations< DIM >::compute_error(), oomph::FoepplvonKarmanEquations::compute_error(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::compute_error(), oomph::UnsteadyHeatEquations< DIM >::compute_error(), oomph::FourierDecomposedHelmholtzEquations::compute_error(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::compute_error(), oomph::PMLFourierDecomposedHelmholtzEquationsBase::compute_error(), oomph::HelmholtzEquations< DIM >::compute_error(), oomph::PoissonEquations< DIM >::compute_error(), oomph::AxisymAdvectionDiffusionEquations::compute_error(), oomph::AdvectionDiffusionEquations< DIM >::compute_error(), oomph::BiharmonicEquations< DIM >::compute_error(), oomph::WomersleyEquations< DIM >::compute_error(), oomph::PMLHelmholtzEquationsBase< DIM >::compute_error(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::compute_error(), oomph::LinearElasticityEquations< DIM >::compute_error(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::compute_error(), oomph::DarcyEquations< 2 >::compute_error(), oomph::PolarNavierStokesEquations::compute_error(), oomph::AxisymmetricLinearElasticityEquations::compute_error(), oomph::SphericalNavierStokesEquations::compute_error(), oomph::PoroelasticityEquations< 2 >::compute_error(), oomph::AxisymmetricNavierStokesEquations::compute_error(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::compute_error(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::compute_error(), oomph::NavierStokesEquations< DIM >::compute_error(), oomph::AxisymmetricPoroelasticityEquations::compute_error(), oomph::SphericalNavierStokesEquations::compute_error_e(), oomph::RefineablePoissonEquations< DIM >::compute_exact_Z2_error(), oomph::FourierDecomposedHelmholtzDtNBoundaryElement< ELEMENT >::compute_gamma_contribution(), oomph::HelmholtzDtNBoundaryElement< ELEMENT >::compute_gamma_contribution(), oomph::UnsteadyHeatEquations< DIM >::compute_norm(), oomph::FourierDecomposedHelmholtzEquations::compute_norm(), oomph::PMLFourierDecomposedHelmholtzEquationsBase::compute_norm(), oomph::PoissonEquations< DIM >::compute_norm(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::compute_norm(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::compute_norm(), oomph::PMLHelmholtzEquationsBase< DIM >::compute_norm(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::compute_norm(), oomph::NavierStokesEquations< DIM >::compute_norm(), oomph::SolidFiniteElement::compute_norm(), oomph::AxisymmetricNavierStokesEquations::compute_physical_size(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::compute_physical_size(), oomph::SphericalNavierStokesEquations::compute_shear_stress(), oomph::QSUPGAdvectionDiffusionElement< DIM, NNODE_1D >::compute_stabilisation_parameter(), oomph::Conformal2DPMLElement::Conformal2DPMLElement(), oomph::FaceElement::continuous_tangent_and_outer_unit_normal(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::contribution_to_enclosed_volume(), oomph::LineVolumeConstraintBoundingElement::contribution_to_enclosed_volume(), oomph::AxisymmetricVolumeConstraintBoundingElement::contribution_to_enclosed_volume(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::contribution_to_total_porous_flux(), oomph::AxisymmetricPoroelasticityTractionElement< POROELASTICITY_BULK_ELEMENT >::contribution_to_total_porous_flux(), oomph::AxisymmetricVolumeConstraintBoundingElement::contribution_to_volume_flux(), oomph::GmshTetScaffoldMesh::create_mesh_from_msh_file(), oomph::UnstructuredTwoDMeshGeometryBase::create_vertex_coordinates_for_polyline_connections(), oomph::UnstructuredTwoDMeshGeometryBase::create_vertex_coordinates_for_polyline_no_connections(), oomph::CylinderWithFlagMesh< ELEMENT >::CylinderWithFlagMesh(), oomph::BellElementBase< NNODE_1D >::d2basis_c0_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::d2basis_c0_local_at_knot(), oomph::BellElementBase< NNODE_1D >::d2basis_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::d2basis_local_at_knot_curve(), oomph::C1CurvedElementBase< NNODE_1D >::d2basis_local_at_knot_straight(), oomph::OneDimHermite::d2shape(), oomph::OneDimLagrange::d2shape< 4 >(), oomph::FiniteElement::d2shape_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::d2shape_local_at_knot_geom(), oomph::BellElementBase< NNODE_1D >::d2test_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::d2test_local_at_knot(), oomph::SphericalNavierStokesEquations::d_kin_energy_dt(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::d_kin_energy_dt(), oomph::NavierStokesEquations< DIM >::d_kin_energy_dt(), oomph::BellElementBase< NNODE_1D >::dbasis_c0_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::dbasis_c0_local_at_knot(), oomph::BellElementBase< NNODE_1D >::dbasis_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::dbasis_local_at_knot_curve(), oomph::C1CurvedElementBase< NNODE_1D >::dbasis_local_at_knot_straight(), oomph::CollapsibleChannelDomain::default_BL_squash_fct(), oomph::QuarterCircleSectorDomain::default_BL_squash_fct(), oomph::QuarterTubeDomain::default_BL_squash_fct(), oomph::ScalarAdvectionEquations< DIM >::dflux_du(), oomph::SteadyAxisymAdvectionDiffusionEquations::dinterpolated_u_adv_diff_ddata(), oomph::SphericalAdvectionDiffusionEquations::dinterpolated_u_adv_diff_ddata(), oomph::AdvectionDiffusionEquations< DIM >::dinterpolated_u_adv_diff_ddata(), oomph::AxisymAdvectionDiffusionEquations::dinterpolated_u_axi_adv_diff_ddata(), oomph::PolarNavierStokesEquations::dissipation(), oomph::SphericalNavierStokesEquations::dissipation(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::dissipation(), oomph::AxisymmetricNavierStokesEquations::dissipation(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::dissipation(), oomph::NavierStokesEquations< DIM >::dissipation(), oomph::SolidHelpers::doc_2D_principal_stress(), oomph::Mesh::doc_boundary_coordinates(), oomph::OcTree::doc_face_neighbours(), oomph::Z2ErrorEstimator::doc_flux(), oomph::FSI_functions::doc_fsi(), oomph::BinaryTree::doc_neighbours(), oomph::QuadTree::doc_neighbours(), oomph::FpPressureAdvectionDiffusionProblem< ELEMENT >::doc_solution(), oomph::OcTree::doc_true_edge_neighbours(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::drag_force(), oomph::OneDimHermite::dshape(), oomph::OneDimLagrange::dshape< 3 >(), oomph::OneDimLagrange::dshape< 4 >(), oomph::QSUPGAdvectionDiffusionElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_at_knot_adv_diff(), oomph::FiniteElement::dshape_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::dshape_local_at_knot_geom(), oomph::SurfactantTransportInterfaceElement::dsigma_dC(), oomph::BellElementBase< NNODE_1D >::dtest_local_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::dtest_local_at_knot(), oomph::SpineMesh::dump(), oomph::PoroelasticityEquations< 2 >::E(), oomph::EighthSphereMesh< ELEMENT >::EighthSphereMesh(), oomph::PMLElementBase< 2 >::enable_pml(), oomph::TangentiallyVaryingConformal2DPMLElement::enable_pml(), oomph::TangentiallyDiscontinuousConformal2DPMLElement::enable_pml(), oomph::PVDEquations< DIM >::extended_output(), oomph::PVDEquationsWithPressure< DIM >::extended_output(), oomph::SphericalNavierStokesEquations::extract_velocity(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::extrapolated_strain_rate(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::extrapolated_strain_rate(), RefineableBinArray::fill_bin_array(), NonRefineableBinArray::fill_bin_by_diffusion(), oomph::AxisymmetricNavierStokesEquations::fill_in_contribution_to_hessian_vector_products(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_contribution_to_hessian_vector_products(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::fill_in_contribution_to_jacobian(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::fill_in_contribution_to_jacobian(), oomph::LinearElasticityEquations< DIM >::fill_in_contribution_to_jacobian(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::fill_in_contribution_to_jacobian(), oomph::AxisymmetricLinearElasticityEquations::fill_in_contribution_to_jacobian(), oomph::YoungLaplaceContactAngleElement< ELEMENT >::fill_in_contribution_to_residuals(), oomph::ClampedSlidingHermiteBeamBoundaryConditionElement::fill_in_contribution_to_residuals(), oomph::ClampedHermiteShellBoundaryConditionElement::fill_in_contribution_to_residuals(), oomph::AxisymmetricLinearElasticityEquations::fill_in_generic_contribution_to_residuals_axisymmetric_linear_elasticity(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::fill_in_generic_contribution_to_residuals_fourier_decomp_time_harmonic_linear_elasticity(), oomph::RefineableLinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_linear_elasticity(), oomph::LinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_linear_elasticity(), oomph::RefineablePVDEquations< DIM >::fill_in_generic_contribution_to_residuals_pvd(), oomph::PVDEquations< DIM >::fill_in_generic_contribution_to_residuals_pvd(), oomph::RefineableTimeHarmonicLinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_time_harmonic_linear_elasticity(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_time_harmonic_linear_elasticity(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::fill_in_generic_contribution_to_residuals_time_harmonic_linear_elasticity(), oomph::AxisymmetricNavierStokesEquations::fill_in_generic_dresidual_contribution_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_generic_dresidual_contribution_axi_nst(), oomph::SolidFiniteElement::fill_in_generic_jacobian_for_solid_ic(), oomph::RefineableNavierStokesEquations< DIM >::fill_in_generic_pressure_advection_diffusion_contribution_nst(), oomph::NavierStokesEquations< DIM >::fill_in_generic_pressure_advection_diffusion_contribution_nst(), oomph::RefineablePolarNavierStokesEquations::fill_in_generic_residual_contribution(), oomph::DarcyEquations< 2 >::fill_in_generic_residual_contribution(), oomph::PolarNavierStokesEquations::fill_in_generic_residual_contribution(), oomph::PoroelasticityEquations< 2 >::fill_in_generic_residual_contribution(), oomph::AxisymmetricPoroelasticityEquations::fill_in_generic_residual_contribution(), oomph::RefineableAdvectionDiffusionEquations< DIM >::fill_in_generic_residual_contribution_adv_diff(), oomph::SteadyAxisymAdvectionDiffusionEquations::fill_in_generic_residual_contribution_adv_diff(), oomph::AdvectionDiffusionEquations< DIM >::fill_in_generic_residual_contribution_adv_diff(), oomph::AdvectionDiffusionFluxElement< ELEMENT >::fill_in_generic_residual_contribution_adv_diff_flux(), oomph::SteadyAxisymAdvectionDiffusionFluxElement< ELEMENT >::fill_in_generic_residual_contribution_adv_diff_flux(), oomph::RefineableAdvectionDiffusionReactionEquations< NREAGENT, DIM >::fill_in_generic_residual_contribution_adv_diff_react(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::fill_in_generic_residual_contribution_adv_diff_react(), oomph::RefineableAxisymAdvectionDiffusionEquations::fill_in_generic_residual_contribution_axi_adv_diff(), oomph::AxisymAdvectionDiffusionEquations::fill_in_generic_residual_contribution_axi_adv_diff(), oomph::AxisymAdvectionDiffusionFluxElement< ELEMENT >::fill_in_generic_residual_contribution_axi_adv_diff_flux(), oomph::RefineableAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::RefineableGeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::AxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::fill_in_generic_residual_contribution_axisym_poroelastic_fsi(), oomph::BiharmonicEquations< DIM >::fill_in_generic_residual_contribution_biharmonic(), oomph::BiharmonicFluxElement< DIM >::fill_in_generic_residual_contribution_biharmonic_flux(), oomph::RefineableGeneralisedAdvectionDiffusionEquations< DIM >::fill_in_generic_residual_contribution_cons_adv_diff(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::fill_in_generic_residual_contribution_cons_adv_diff(), oomph::RefineableGeneralisedAxisymAdvectionDiffusionEquations::fill_in_generic_residual_contribution_cons_axisym_adv_diff(), oomph::FourierDecomposedHelmholtzDtNBoundaryElement< ELEMENT >::fill_in_generic_residual_contribution_fourier_decomposed_helmholtz_DtN_bc(), oomph::FourierDecomposedHelmholtzFluxElement< ELEMENT >::fill_in_generic_residual_contribution_fourier_decomposed_helmholtz_flux(), oomph::RefineableFpPressureAdvDiffRobinBCElement< ELEMENT >::fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(), oomph::FpPressureAdvDiffRobinBCElement< ELEMENT >::fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(), oomph::LinearisedFSIAxisymmetricNStNoSlipBCElementElement< FLUID_BULK_ELEMENT, SOLID_BULK_ELEMENT >::fill_in_generic_residual_contribution_fsi_no_slip_axisym(), oomph::RefineablePMLHelmholtzEquations< DIM, PML_ELEMENT >::fill_in_generic_residual_contribution_helmholtz(), oomph::PMLHelmholtzEquations< DIM, PML_ELEMENT >::fill_in_generic_residual_contribution_helmholtz(), oomph::HelmholtzAbsorbingBCElement< ELEMENT >::fill_in_generic_residual_contribution_helmholtz_abc(), oomph::HelmholtzDtNBoundaryElement< ELEMENT >::fill_in_generic_residual_contribution_helmholtz_DtN_bc(), oomph::HelmholtzFluxElement< ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux(), oomph::PMLHelmholtzFluxElement< ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux(), oomph::FourierDecomposedHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux_from_displacement(), oomph::HelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux_from_displacement(), oomph::PMLHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux_from_displacement(), oomph::FluidInterfaceElement::fill_in_generic_residual_contribution_interface(), oomph::RefineableLinearWaveEquations< DIM >::fill_in_generic_residual_contribution_lin_wave(), oomph::LinearWaveEquations< DIM >::fill_in_generic_residual_contribution_lin_wave(), oomph::LinearWaveFluxElement< ELEMENT >::fill_in_generic_residual_contribution_lin_wave_flux(), oomph::LinearisedAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_linearised_axi_nst(), oomph::RefineableLinearisedAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_linearised_axi_nst(), oomph::LinearisedNavierStokesEquations::fill_in_generic_residual_contribution_linearised_nst(), oomph::RefineableLinearisedNavierStokesEquations::fill_in_generic_residual_contribution_linearised_nst(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::RefineableNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::NavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::PMLFourierDecomposedHelmholtzEquations< PML_ELEMENT >::fill_in_generic_residual_contribution_pml_fourier_decomposed_helmholtz(), oomph::PMLFourierDecomposedHelmholtzFluxElement< ELEMENT >::fill_in_generic_residual_contribution_pml_fourier_decomposed_helmholtz_flux(), oomph::PoissonFluxElement< ELEMENT >::fill_in_generic_residual_contribution_poisson_flux(), oomph::RefineablePVDEquationsWithPressure< DIM >::fill_in_generic_residual_contribution_pvd_with_pressure(), oomph::PVDEquationsWithPressure< DIM >::fill_in_generic_residual_contribution_pvd_with_pressure(), oomph::RefineableSphericalAdvectionDiffusionEquations::fill_in_generic_residual_contribution_spherical_adv_diff(), oomph::SphericalAdvectionDiffusionEquations::fill_in_generic_residual_contribution_spherical_adv_diff(), oomph::SphericalAdvectionDiffusionFluxElement< ELEMENT >::fill_in_generic_residual_contribution_spherical_adv_diff_flux(), oomph::SphericalNavierStokesEquations::fill_in_generic_residual_contribution_spherical_nst(), oomph::RefineableSphericalNavierStokesEquations::fill_in_generic_residual_contribution_spherical_nst(), oomph::RefineableUnsteadyHeatEquations< DIM >::fill_in_generic_residual_contribution_ust_heat(), oomph::UnsteadyHeatEquations< DIM >::fill_in_generic_residual_contribution_ust_heat(), oomph::UnsteadyHeatFluxElement< ELEMENT >::fill_in_generic_residual_contribution_ust_heat_flux(), oomph::LineVolumeConstraintBoundingElement::fill_in_generic_residual_contribution_volume_constraint(), oomph::AxisymmetricVolumeConstraintBoundingElement::fill_in_generic_residual_contribution_volume_constraint(), oomph::SurfaceVolumeConstraintBoundingElement::fill_in_generic_residual_contribution_volume_constraint(), oomph::WomersleyEquations< DIM >::fill_in_generic_residual_contribution_womersley(), oomph::SolidFiniteElement::fill_in_jacobian_for_newmark_accel(), oomph::Multi_domain_functions::first_closer_than_second(), oomph::AxisymmetricQCrouzeixRaviartElement::fix_pressure(), oomph::GeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::fix_pressure(), oomph::AxisymmetricQTaylorHoodElement::fix_pressure(), oomph::GeneralisedNewtonianAxisymmetricQTaylorHoodElement::fix_pressure(), oomph::ScalarAdvectionEquations< DIM >::flux(), oomph::FluxTransportEquations< DIM >::flux(), for(), oomph::PolarNavierStokesEquations::full_output(), oomph::SphericalNavierStokesEquations::full_output(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::full_output(), oomph::NavierStokesEquations< DIM >::full_output(), oomph::FullCircleMesh< ELEMENT >::FullCircleMesh(), oomph::GaussLegendre< 1, NPTS_1D >::GaussLegendre(), oomph::GaussLegendre< 2, NPTS_1D >::GaussLegendre(), oomph::GaussLegendre< 3, NPTS_1D >::GaussLegendre(), oomph::GaussLobattoLegendre< 1, NPTS_1D >::GaussLobattoLegendre(), oomph::GaussLobattoLegendre< 2, NPTS_1D >::GaussLobattoLegendre(), oomph::GaussLobattoLegendre< 3, NPTS_1D >::GaussLobattoLegendre(), oomph::GeneralisedNewtonianQCrouzeixRaviartElement< DIM >::GeneralisedNewtonianQCrouzeixRaviartElement(), oomph::UnstructuredTwoDMeshGeometryBase::get_associated_vertex_to_svalue(), oomph::BlockPreconditioner< CRDoubleMatrix >::get_concatenated_block(), oomph::PMLHelmholtzEquationsBase< DIM >::get_dof_numbers_for_unknowns(), oomph::NavierStokesSurfaceDragTorqueElement< ELEMENT >::get_drag_and_torque(), oomph::RefineableAxisymmetricNavierStokesEquations::get_dresidual_dnodal_coordinates(), oomph::RefineableGeneralisedNewtonianAxisymmetricNavierStokesEquations::get_dresidual_dnodal_coordinates(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::RefineableNavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::AxisymmetricNavierStokesEquations::get_dresidual_dnodal_coordinates(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::get_dresidual_dnodal_coordinates(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::NavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::FaceElement::get_ds_bulk_ds_face(), oomph::Z2ErrorEstimator::get_element_errors(), oomph::PVDEquationsBase< DIM >::get_energy(), oomph::RefineableTriangleMesh< ELEMENT >::get_face_mesh_representation(), oomph::BiharmonicFluxElement< DIM >::get_flux0(), oomph::BiharmonicFluxElement< DIM >::get_flux1(), oomph::RefineableElement::get_interpolated_values(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::get_kinetic_energy_flux(), oomph::FaceElement::get_local_coordinate_in_bulk(), oomph::KirchhoffLoveBeamEquations::get_normal(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::RefineableNavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::NavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::get_rate_of_traction_work(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::get_rate_of_traction_work_components(), oomph::Z2ErrorEstimator::get_recovered_flux_in_patch(), VorticitySmoother< ELEMENT >::get_recovered_vorticity_in_patch(), CGALSamplePointContainer::get_sample_points(), oomph::YoungLaplaceEquations::get_spine(), oomph::FSILinearisedAxisymPoroelasticTractionElement< POROELASTICITY_BULK_ELEMENT, NAVIER_STOKES_BULK_ELEMENT >::get_traction(), oomph::WomersleyEquations< DIM >::get_volume_flux(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::get_volume_flux(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::get_volume_flux(), oomph::PMLHelmholtzPowerElement< ELEMENT >::global_flux_contribution(), oomph::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::global_flux_contribution_from_helmholtz(), oomph::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::global_flux_contribution_from_solid(), oomph::PMLHelmholtzPowerElement< ELEMENT >::global_power_contribution(), oomph::FourierDecomposedHelmholtzBCElementBase< ELEMENT >::global_power_contribution(), oomph::HelmholtzBCElementBase< ELEMENT >::global_power_contribution(), oomph::PMLFourierDecomposedHelmholtzPowerMonitorElement< ELEMENT >::global_power_contribution(), if(), oomph::BiharmonicFluidProblem< DIM >::impose_fluid_flow_on_edge(), CGALSamplePointContainer::initial_last_sample_point_to_actually_lookup_during_locate_zeta(), oomph::SurfactantTransportInterfaceElement::integrate_c(), oomph::FiniteElement::integrate_fct(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::integrate_u(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::interpolated_c_adv_diff_react(), oomph::LinearWaveEquations< DIM >::interpolated_d2u_dt2_lin_wave(), oomph::UnsteadyHeatEquations< DIM >::interpolated_du_dt_ust_heat(), oomph::AxisymFoepplvonKarmanEquations::interpolated_stress(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::interpolated_u_cons_adv_diff(), oomph::interpolated_u_cons_axisym_adv_diff(), oomph::FourierDecomposedHelmholtzEquations::interpolated_u_fourier_decomposed_helmholtz(), oomph::AxisymFoepplvonKarmanEquations::interpolated_u_fvk(), oomph::HelmholtzEquations< DIM >::interpolated_u_helmholtz(), oomph::PMLFourierDecomposedHelmholtzEquationsBase::interpolated_u_pml_fourier_decomposed_helmholtz(), oomph::PoissonEquations< DIM >::interpolated_u_poisson(), oomph::WomersleyEquations< DIM >::interpolated_u_womersley(), oomph::AxisymFoepplvonKarmanEquations::interpolated_w_fvk(), oomph::FoepplvonKarmanEquations::interpolated_w_fvk(), oomph::GeomObject::interpolated_zeta(), oomph::PolarNavierStokesEquations::kin_energy(), oomph::SphericalNavierStokesEquations::kin_energy(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::kin_energy(), oomph::AxisymmetricNavierStokesEquations::kin_energy(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::kin_energy(), oomph::NavierStokesEquations< DIM >::kin_energy(), oomph::AxisymmetricPoroelasticityTractionElement< POROELASTICITY_BULK_ELEMENT >::lagrangian_eulerian_translation_factor(), oomph::KirchhoffLoveShellEquations::load_rate_of_work(), oomph::FaceElement::local_coordinate_in_bulk(), oomph::QSpectralElement< 1, NNODE_1D >::local_one_d_fraction_of_node(), oomph::QSpectralElement< 2, NNODE_1D >::local_one_d_fraction_of_node(), oomph::QSpectralElement< 3, NNODE_1D >::local_one_d_fraction_of_node(), RefineableBin::locate_zeta(), oomph::FiniteElement::locate_zeta(), oomph::ChannelWithLeafletDomain::macro_bound_I_E(), oomph::ChannelWithLeafletDomain::macro_bound_I_W(), oomph::ChannelWithLeafletDomain::macro_bound_II_E(), oomph::ChannelWithLeafletDomain::macro_bound_II_W(), oomph::ChannelWithLeafletDomain::macro_bound_III_E(), oomph::ChannelWithLeafletDomain::macro_bound_III_W(), oomph::ChannelWithLeafletDomain::macro_bound_IV_E(), oomph::ChannelWithLeafletDomain::macro_bound_IV_W(), oomph::MacroElement::macro_map(), oomph::DarcyEquations< 2 >::mass_source(), oomph::AxisymmetricPoroelasticityEquations::mass_source(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::max_and_min_invariant_and_viscosity(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::max_and_min_invariant_and_viscosity(), oomph::QHermiteElement< DIM-1 >::move_local_coord_back_into_element(), oomph::UnstructuredTwoDMeshGeometryBase::nboundary_segment_node(), oomph::ElementWithZ2ErrorEstimator::ncompound_fluxes(), oomph::DGFaceElement::neighbour_face_pt(), oomph::RefineableQElement< 3 >::node_created_by_neighbour(), oomph::RefineableQElement< 2 >::node_created_by_neighbour(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::node_created_by_neighbour(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::node_created_by_neighbour(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::node_created_by_son_of_neighbour(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::node_created_by_son_of_neighbour(), oomph::Mesh::node_update(), oomph::AlgebraicChannelWithLeafletMesh< ELEMENT >::node_update_I(), oomph::AlgebraicChannelWithLeafletMesh< ELEMENT >::node_update_II(), oomph::AlgebraicChannelWithLeafletMesh< ELEMENT >::node_update_III(), oomph::AlgebraicChannelWithLeafletMesh< ELEMENT >::node_update_IV(), oomph::DGScalarAdvectionFaceElement< ELEMENT >::numerical_flux(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::oc_hang_helper(), oomph::OneDimensionalLegendreDShape< NNODE_1D >::OneDimensionalLegendreDShape(), oomph::OneDimensionalLegendreShape< NNODE_1D >::OneDimensionalLegendreShape(), oomph::OneDimensionalModalDShape::OneDimensionalModalDShape(), oomph::OneDimensionalModalShape::OneDimensionalModalShape(), oomph::OneDLegendreDShapeParam::OneDLegendreDShapeParam(), oomph::OneDLegendreShapeParam::OneDLegendreShapeParam(), oomph::FSIFluidElement::operator=(), RefineableBin::operator=(), NonRefineableBinArray::operator=(), oomph::PeriodicOrbitEquations::orbit_output(), oomph::FaceElement::outer_unit_normal(), oomph::BiharmonicEquations< DIM >::output(), oomph::YoungLaplaceEquations::output(), oomph::SteadyAxisymAdvectionDiffusionEquations::output(), oomph::Domain::output(), oomph::AxisymFoepplvonKarmanEquations::output(), oomph::PoissonFluxElement< ELEMENT >::output(), oomph::YoungLaplaceContactAngleElement< ELEMENT >::output(), oomph::DummyBrickElement::output(), oomph::DisplacementBasedFoepplvonKarmanEquations::output(), oomph::SurfactantTransportInterfaceElement::output(), oomph::SphericalAdvectionDiffusionEquations::output(), oomph::FoepplvonKarmanEquations::output(), oomph::LinearWaveEquations< DIM >::output(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::output(), oomph::BuoyantQCrouzeixRaviartElement< DIM >::output(), oomph::QSUPGAdvectionDiffusionElement< DIM, NNODE_1D >::output(), oomph::QHermiteElement< DIM-1 >::output(), oomph::FluxTransportEquations< DIM >::output(), oomph::FourierDecomposedHelmholtzEquations::output(), oomph::UnsteadyHeatEquations< DIM >::output(), oomph::EulerEquations< DIM >::output(), oomph::AxisymmetricLinearElasticityTractionElement< ELEMENT >::output(), oomph::SolidTractionElement< ELEMENT >::output(), oomph::PMLFourierDecomposedHelmholtzEquationsBase::output(), oomph::DarcyFaceElement< ELEMENT >::output(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::output(), oomph::TimeHarmonicFourierDecomposedLinearElasticityTractionElement< ELEMENT >::output(), oomph::TimeHarmonicLinearElasticityTractionElement< ELEMENT >::output(), oomph::PMLTimeHarmonicLinearElasticityTractionElement< ELEMENT >::output(), oomph::HelmholtzEquations< DIM >::output(), oomph::LinearElasticityTractionElement< ELEMENT >::output(), oomph::QSpectralScalarAdvectionElement< 2, NNODE_1D >::output(), oomph::NavierStokesSurfaceDragTorqueElement< ELEMENT >::output(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::output(), oomph::PoissonEquations< DIM >::output(), oomph::AdvectionDiffusionEquations< DIM >::output(), oomph::PoroelasticityFaceElement< ELEMENT >::output(), oomph::AxisymmetricPoroelasticityTractionElement< POROELASTICITY_BULK_ELEMENT >::output(), oomph::AxisymAdvectionDiffusionEquations::output(), oomph::QSpectralEulerElement< 2, NNODE_1D >::output(), oomph::PMLHelmholtzEquationsBase< DIM >::output(), oomph::QMacroElement< 2 >::output(), oomph::WomersleyEquations< DIM >::output(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::output(), oomph::HermiteBeamElement::output(), oomph::HermiteShellElement::output(), oomph::LinearisedAxisymmetricNavierStokesEquations::output(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::output(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::output(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::output(), oomph::RefineableAdvectionDiffusionBoussinesqElement< AD_ELEMENT, NST_ELEMENT >::output(), oomph::AxisymmetricPVDEquations::output(), oomph::LinearElasticityEquations< DIM >::output(), oomph::PolarNavierStokesEquations::output(), oomph::LinearisedNavierStokesEquations::output(), oomph::DarcyEquations< 2 >::output(), oomph::SphericalNavierStokesEquations::output(), oomph::PVDEquations< DIM >::output(), oomph::AxisymmetricLinearElasticityEquations::output(), oomph::SpectralPeriodicOrbitElement< NNODE_1D >::output(), oomph::QSpectralElement< 1, NNODE_1D >::output(), oomph::AxisymDiagHermitePVDElement::output(), oomph::FluidInterfaceElement::output(), oomph::PoroelasticityEquations< 2 >::output(), oomph::QElement< 1, NNODE_1D >::output(), oomph::ClampedHermiteShellBoundaryConditionElement::output(), oomph::QScalarAdvectionElement< 2, NNODE_1D >::output(), oomph::QSpectralElement< 2, NNODE_1D >::output(), oomph::AxisymmetricNavierStokesEquations::output(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::output(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::output(), oomph::FSIAxisymFoepplvonKarmanElement< NNODE_1D, FLUID_ELEMENT >::output(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::output(), oomph::ProjectableUnsteadyHeatElement< UNSTEADY_HEAT_ELEMENT >::output(), oomph::FSISolidTractionElement< ELEMENT, DIM >::output(), oomph::PVDEquationsWithPressure< DIM >::output(), oomph::NavierStokesEquations< DIM >::output(), oomph::QElement< 2, NNODE_1D >::output(), oomph::QSpectralElement< 3, NNODE_1D >::output(), oomph::FSILinearisedAxisymPoroelasticTractionElement< POROELASTICITY_BULK_ELEMENT, NAVIER_STOKES_BULK_ELEMENT >::output(), oomph::AdvectionDiffusionBoussinesqElement< AD_ELEMENT, NST_ELEMENT >::output(), oomph::SolidQHermiteElement< 2 >::output(), oomph::VorticitySmootherElement< ELEMENT >::output(), oomph::AxisymmetricPoroelasticityEquations::output(), oomph::AxisymmetricPVDEquationsWithPressure::output(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::output(), oomph::QElement< 3, NNODE_1D >::output(), oomph::TElement< 1, NNODE_1D >::output(), oomph::SolidQElement< 1, NNODE_1D >::output(), oomph::TElement< 2, NNODE_1D >::output(), oomph::SolidQElement< 2, NNODE_1D >::output(), oomph::SolidQElement< 3, NNODE_1D >::output(), oomph::FSIImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::output(), oomph::TElement< 3, NNODE_1D >::output(), oomph::WomersleyEquations< DIM >::output_3d(), oomph::VorticitySmootherElement< ELEMENT >::output_analytical_veloc_and_vorticity(), NonRefineableBinArray::output_bins(), oomph::RefineableQElement< 3 >::output_corners(), oomph::RefineableQElement< 1 >::output_corners(), oomph::RefineableQElement< 2 >::output_corners(), oomph::ElementWithExternalElement::output_external_elements(), oomph::DGElement::output_faces(), oomph::YoungLaplaceEquations::output_fct(), oomph::QSpectralPoissonElement< DIM, NNODE_1D >::output_fct(), oomph::TWomersleyElement< DIM, NNODE_1D >::output_fct(), oomph::SteadyAxisymAdvectionDiffusionEquations::output_fct(), oomph::TPoissonElement< DIM, NNODE_1D >::output_fct(), oomph::TFoepplvonKarmanElement< NNODE_1D >::output_fct(), oomph::THelmholtzElement< DIM, NNODE_1D >::output_fct(), oomph::TUnsteadyHeatElement< DIM, NNODE_1D >::output_fct(), oomph::AxisymFoepplvonKarmanEquations::output_fct(), oomph::TPMLHelmholtzElement< DIM, NNODE_1D, PML_ELEMENT >::output_fct(), oomph::TFourierDecomposedHelmholtzElement< NNODE_1D >::output_fct(), oomph::TPMLFourierDecomposedHelmholtzElement< NNODE_1D, PML_ELEMENT >::output_fct(), oomph::DisplacementBasedFoepplvonKarmanEquations::output_fct(), oomph::SphericalAdvectionDiffusionEquations::output_fct(), oomph::FoepplvonKarmanEquations::output_fct(), oomph::LinearWaveEquations< DIM >::output_fct(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::output_fct(), oomph::UnsteadyHeatEquations< DIM >::output_fct(), oomph::FourierDecomposedHelmholtzEquations::output_fct(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::output_fct(), oomph::PMLFourierDecomposedHelmholtzEquationsBase::output_fct(), oomph::BiharmonicEquations< DIM >::output_fct(), oomph::HelmholtzEquations< DIM >::output_fct(), oomph::PoissonEquations< DIM >::output_fct(), oomph::AdvectionDiffusionEquations< DIM >::output_fct(), oomph::AxisymAdvectionDiffusionEquations::output_fct(), oomph::TDisplacementBasedFoepplvonKarmanElement< NNODE_1D >::output_fct(), oomph::WomersleyEquations< DIM >::output_fct(), oomph::PMLHelmholtzEquationsBase< DIM >::output_fct(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::output_fct(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::output_fct(), oomph::LinearElasticityEquations< DIM >::output_fct(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::output_fct(), oomph::DarcyEquations< 2 >::output_fct(), oomph::PolarNavierStokesEquations::output_fct(), oomph::AxisymmetricLinearElasticityEquations::output_fct(), oomph::AxisymFoepplvonKarmanElement< NNODE_1D >::output_fct(), oomph::QLinearWaveElement< DIM, NNODE_1D >::output_fct(), oomph::SphericalNavierStokesEquations::output_fct(), oomph::QSteadyAxisymAdvectionDiffusionElement< NNODE_1D >::output_fct(), oomph::QFourierDecomposedHelmholtzElement< NNODE_1D >::output_fct(), oomph::QUnsteadyHeatElement< DIM, NNODE_1D >::output_fct(), oomph::QHelmholtzElement< DIM, NNODE_1D >::output_fct(), oomph::QSphericalAdvectionDiffusionElement< NNODE_1D >::output_fct(), oomph::QFoepplvonKarmanElement< NNODE_1D >::output_fct(), oomph::QPMLFourierDecomposedHelmholtzElement< NNODE_1D, PML_ELEMENT >::output_fct(), oomph::QPoissonElement< DIM, 2 >::output_fct(), oomph::QAdvectionDiffusionElement< DIM, 3 >::output_fct(), oomph::QAxisymAdvectionDiffusionElement< NNODE_1D >::output_fct(), oomph::QGeneralisedAdvectionDiffusionElement< DIM, NNODE_1D >::output_fct(), oomph::PoroelasticityEquations< 2 >::output_fct(), QGeneralisedAxisymAdvectionDiffusionElement< NNODE_1D >::output_fct(), oomph::QAdvectionDiffusionReactionElement< NREAGENT, DIM, NNODE_1D >::output_fct(), oomph::QWomersleyElement< DIM, NNODE_1D >::output_fct(), oomph::AxisymmetricNavierStokesEquations::output_fct(), oomph::QPMLHelmholtzElement< 2, NNODE_1D, PML_ELEMENT >::output_fct(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::output_fct(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::output_fct(), oomph::NavierStokesEquations< DIM >::output_fct(), oomph::AxisymmetricPoroelasticityEquations::output_fct(), oomph::BiharmonicEquations< DIM >::output_fluid_velocity(), oomph::PMLHelmholtzEquationsBase< DIM >::output_imag(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::output_imag(), oomph::PMLHelmholtzEquationsBase< DIM >::output_imag_fct(), oomph::FSIAxisymFoepplvonKarmanElement< NNODE_1D, FLUID_ELEMENT >::output_integration_points(), oomph::QMacroElement< 2 >::output_macro_element_boundaries(), oomph::QMacroElement< 3 >::output_macro_element_boundaries(), oomph::FiniteElement::output_paraview(), oomph::NavierStokesEquations< DIM >::output_pressure_advection_diffusion_robin_elements(), oomph::FourierDecomposedHelmholtzEquations::output_real(), oomph::PMLFourierDecomposedHelmholtzEquationsBase::output_real(), oomph::HelmholtzEquations< DIM >::output_real(), oomph::PMLHelmholtzEquationsBase< DIM >::output_real(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::output_real(), oomph::FourierDecomposedHelmholtzEquations::output_real_fct(), oomph::PMLFourierDecomposedHelmholtzEquationsBase::output_real_fct(), oomph::HelmholtzEquations< DIM >::output_real_fct(), oomph::PMLHelmholtzEquationsBase< DIM >::output_real_fct(), oomph::VorticitySmootherElement< ELEMENT >::output_smoothed_vorticity(), oomph::PMLHelmholtzEquationsBase< DIM >::output_total_real(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM, PML_ELEMENT >::output_total_real(), oomph::LinearisedAxisymmetricNavierStokesEquations::output_veloc(), oomph::LinearisedNavierStokesEquations::output_veloc(), oomph::PolarNavierStokesEquations::output_veloc(), oomph::SphericalNavierStokesEquations::output_veloc(), oomph::AxisymmetricNavierStokesEquations::output_veloc(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::output_veloc(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::output_veloc(), oomph::NavierStokesEquations< DIM >::output_veloc(), oomph::SphericalNavierStokesEquations::output_vorticity(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::output_vorticity(), oomph::NavierStokesEquations< DIM >::output_vorticity(), oomph::DarcyEquations< 2 >::output_with_projected_flux(), oomph::HermiteShellElement::output_with_time_dep_quantities(), oomph::FaceElement::output_zeta(), oomph::TreeBasedRefineableMeshBase::p_adapt_mesh(), oomph::LinearisedAxisymmetricNavierStokesEquations::p_index_linearised_axi_nst(), oomph::LinearisedNavierStokesEquations::p_index_linearised_nst(), oomph::AxisymmetricNavierStokesEquations::p_nodal_index_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::p_nodal_index_axi_nst(), oomph::SphericalNavierStokesEquations::p_nodal_index_spherical_nst(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::p_refine(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::p_refine(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::p_refine(), oomph::LinearElasticityEquationsBase< DIM >::pin_redundant_nodal_solid_pressures(), oomph::NavierStokesEquations< DIM >::pinned_fp_pressure_eqn(), oomph::MeshAsGeomObject::position(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::pre_build(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::pre_build(), oomph::PolarNavierStokesEquations::pressure_integral(), oomph::SphericalNavierStokesEquations::pressure_integral(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::pressure_integral(), oomph::AxisymmetricNavierStokesEquations::pressure_integral(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::pressure_integral(), oomph::NavierStokesEquations< DIM >::pressure_integral(), oomph::PolarNavierStokesEquations::pressure_node_pt(), oomph::PVDEquations< DIM >::PVDEquations(), oomph::PVDEquationsWithPressure< DIM >::PVDEquationsWithPressure(), oomph::TPoroelasticityElement< ORDER >::q_internal(), oomph::QCrouzeixRaviartElement< DIM >::QCrouzeixRaviartElement(), oomph::QElement< 1, NNODE_1D >::QElement(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::quad_hang_helper(), oomph::QuarterCircleSectorMesh< ELEMENT >::QuarterCircleSectorMesh(), oomph::QuarterTubeMesh< ELEMENT >::QuarterTubeMesh(), oomph::NavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::ra_pt(), oomph::SpineMesh::read(), oomph::RefineableQSpectralElement< 2 >::rebuild_from_sons(), oomph::RefineableQSpectralElement< 3 >::rebuild_from_sons(), oomph::RefineableQSpectralElement< 1 >::rebuild_from_sons(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::rebuild_from_sons(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::rebuild_from_sons(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::rebuild_from_sons(), VorticitySmoother< ELEMENT >::recover_vorticity(), oomph::RectangleWithHoleMesh< ELEMENT >::RectangleWithHoleMesh(), oomph::RefineableTriangleMesh< ELEMENT >::refine_boundary_constrained_by_target_area(), oomph::RefineableTriangleMesh< ELEMENT >::refine_shared_boundary_constrained_by_target_area(), oomph::DGFaceElement::report_info(), oomph::GeneralisedNewtonianAxisymmetricTTaylorHoodElement::required_nvalue(), oomph::AxisymmetricTTaylorHoodElement::required_nvalue(), oomph::TTaylorHoodElement< DIM >::required_nvalue(), oomph::GeneralisedNewtonianTTaylorHoodElement< DIM >::required_nvalue(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::required_nvalue(), oomph::QTaylorHoodElement< DIM >::required_nvalue(), oomph::ProjectableElement< TIME_HARMONIC_LINEAR_ELAST_ELEMENT >::residual_for_projection(), oomph::ProjectableDarcyElement< DARCY_ELEMENT >::residual_for_projection(), oomph::ProjectableAxisymmetricPoroelasticityElement< AXISYMMETRIC_POROELASTICITY_ELEMENT >::residual_for_projection(), oomph::QuarterCircleSectorDomain::s_squashed(), oomph::PoissonEquations< DIM >::scalar_value_fct_paraview(), oomph::PMLHelmholtzEquationsBase< DIM >::scalar_value_fct_paraview(), oomph::PoissonEquations< DIM >::scalar_value_paraview(), oomph::HelmholtzEquations< DIM >::scalar_value_paraview(), oomph::PMLHelmholtzEquationsBase< DIM >::scalar_value_paraview(), oomph::AdvectionDiffusionEquations< DIM >::scalar_value_paraview(), oomph::AxisymAdvectionDiffusionEquations::scalar_value_paraview(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::scalar_value_paraview(), oomph::AxisymmetricNavierStokesEquations::scalar_value_paraview(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::scalar_value_paraview(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::scalar_value_paraview(), oomph::NavierStokesEquations< DIM >::scalar_value_paraview(), oomph::VorticitySmootherElement< ELEMENT >::scalar_value_paraview(), oomph::AxisymmetricPoroelasticityEquations::scalar_value_paraview(), oomph::FiniteElement::self_test(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::set_boundary_shape_geom_object_pt(), oomph::BiharmonicProblem< DIM >::set_dirichlet_boundary_condition(), oomph::FSIHermiteBeamElement::set_normal_pointing_out_of_fluid(), oomph::FSIDiagHermiteShellElement::set_normal_pointing_out_of_fluid(), oomph::C1CurvedElementShape< 2, NNODE_1D >::set_of_value(), oomph::TRaviartThomasDarcyElement< ORDER >::set_q_internal(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::set_q_internal(), oomph::HelmholtzMGPreconditioner< DIM >::set_restriction_matrices_as_interpolation_transposes(), oomph::MGSolver< DIM >::set_restriction_matrices_as_interpolation_transposes(), oomph::PeriodicOrbitEquations::set_timestepper_weights(), oomph::LineVisualiser::setup(), oomph::AlgebraicFSIDrivenCavityMesh< ELEMENT >::setup_algebraic_node_update(), oomph::AlgebraicCylinderWithFlagMesh< ELEMENT >::setup_algebraic_node_update(), oomph::AlgebraicChannelWithLeafletMesh< ELEMENT >::setup_algebraic_node_update(), oomph::AlgebraicCollapsibleChannelMesh< ELEMENT >::setup_algebraic_node_update(), oomph::XdaTetMesh< ELEMENT >::setup_boundary_coordinates(), oomph::TetMeshBase::setup_boundary_coordinates(), oomph::Multi_domain_functions::setup_bulk_elements_adjacent_to_face_mesh(), oomph::FourierDecomposedHelmholtzDtNMesh< ELEMENT >::setup_gamma(), oomph::HelmholtzDtNMesh< ELEMENT >::setup_gamma(), oomph::HelmholtzMGPreconditioner< DIM >::setup_interpolation_matrices(), oomph::MGSolver< DIM >::setup_interpolation_matrices(), oomph::HelmholtzMGPreconditioner< DIM >::setup_interpolation_matrices_unstructured(), oomph::MGSolver< DIM >::setup_interpolation_matrices_unstructured(), oomph::DGFaceElement::setup_neighbour_info(), oomph::OneDimHermite::shape(), oomph::OneDimLagrange::shape< 2 >(), oomph::OneDimLagrange::shape< 3 >(), oomph::OneDimLagrange::shape< 4 >(), oomph::FiniteElement::shape_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::shape_at_knot_geom(), oomph::TRaviartThomasDarcyElement< ORDER >::shape_basis_test_local_at_knot(), oomph::TPoroelasticityElement< ORDER >::shape_basis_test_local_at_knot(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::shape_basis_test_local_at_knot(), oomph::RefineableTriangleMesh< ELEMENT >::snap_nodes_onto_boundary(), oomph::TetMeshBase::snap_to_quadratic_surface(), oomph::AxisymQPVDElementWithPressure::solid_p_local_eqn(), oomph::QPVDElementWithPressure< DIM >::solid_p_local_eqn(), oomph::QPVDElementWithContinuousPressure< DIM >::solid_p_local_eqn(), oomph::TPVDElementWithContinuousPressure< DIM >::solid_p_local_eqn(), oomph::AxisymmetricPVDEquationsWithPressure::solid_pshape_at_knot(), oomph::PVDEquationsWithPressure< DIM >::solid_pshape_at_knot(), oomph::BiCGStab< MATRIX >::solve_helper(), oomph::GMRES< MATRIX >::solve_helper(), oomph::HelmholtzGMRESMG< MATRIX >::solve_helper(), oomph::HelmholtzFGMRESMG< MATRIX >::solve_helper(), oomph::TreeBasedRefineableMeshBase::synchronise_nonhanging_nodes(), oomph::BellElementBase< NNODE_1D >::test_at_knot(), oomph::C1CurvedElementBase< NNODE_1D >::test_at_knot(), oomph::ThinLayerBrickOnTetMesh< ELEMENT >::ThinLayerBrickOnTetMesh(), oomph::StringConversion::to_string(), oomph::TriangleMeshBase::triangulateio_representation(), oomph::TubeMesh< ELEMENT >::TubeMesh(), oomph::FluidInterfaceElement::u(), oomph::KirchhoffLoveShellEquations::undeformed_midplane_pt(), oomph::PVDEquationsBase< DIM >::unpin_all_solid_pressure_dofs(), oomph::ComplexGMRES< MATRIX >::update(), oomph::HelmholtzGMRESMG< MATRIX >::update(), oomph::HelmholtzFGMRESMG< MATRIX >::update(), oomph::RefineableAlgebraicFSIDrivenCavityMesh< ELEMENT >::update_node_update(), oomph::RefineableAlgebraicCylinderWithFlagMesh< ELEMENT >::update_node_update(), oomph::AlgebraicFishMesh< ELEMENT >::update_node_update(), oomph::RefineableAlgebraicChannelWithLeafletMesh< ELEMENT >::update_node_update(), oomph::RefineableAlgebraicCollapsibleChannelMesh< ELEMENT >::update_node_update(), oomph::RefineableTriangleMesh< ELEMENT >::update_shared_curve_using_elements_area(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::use_extrapolated_strainrate_to_compute_second_invariant(), oomph::DisplacementBasedFoepplvonKarmanEquations::use_linear_bending_model(), oomph::PRefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::vertex_node_pt(), oomph::PRefineableQCrouzeixRaviartElement< DIM >::vertex_node_pt(), oomph::VorticitySmootherElement< ELEMENT >::vorticity_error_squared(), oomph::GmshTetScaffoldMesh::write_geo_file(), oomph::AnnularDomain::~AnnularDomain(), oomph::CylinderWithFlagDomain::~CylinderWithFlagDomain(), oomph::FullCircleDomain::~FullCircleDomain(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::~PRefineableQElement(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::~PRefineableQElement(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::~PRefineableQElement(), oomph::ProjectableElementBase::~ProjectableElementBase(), SamplePointContainer::~SamplePointContainer(), oomph::TubeDomain::~TubeDomain(), and oomph::WarpedCubeDomain::~WarpedCubeDomain().

sizeofcstr

int sizeofcstr

Definition at line 539 of file cfortran.h.

Referenced by for(), and if().

strv

int num_term char* strv

Definition at line 645 of file cfortran.h.

t

char t

Definition at line 572 of file cfortran.h.

Referenced by oomph::TreeBasedRefineableMeshBase::adapt_mesh(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::adapt_temporal_mesh(), oomph::Data::add_values_to_vector(), oomph::Node::add_values_to_vector(), oomph::AssemblyHandler::AssemblyHandler(), oomph::PeriodicOrbitTimeDiscretisation::assign_initial_data_values(), oomph::Steady< 0 >::assign_initial_data_values(), oomph::Newmark< NSTEPS >::assign_initial_data_values(), oomph::BDF< NSTEPS >::assign_initial_data_values(), oomph::Steady< 0 >::assign_initial_positions_impulsive(), oomph::Newmark< NSTEPS >::assign_initial_positions_impulsive(), oomph::BDF< NSTEPS >::assign_initial_positions_impulsive(), oomph::Steady< 0 >::assign_initial_values_impulsive(), oomph::Newmark< NSTEPS >::assign_initial_values_impulsive(), oomph::BDF< NSTEPS >::assign_initial_values_impulsive(), oomph::Multi_domain_functions::aux_setup_multi_domain_interaction(), oomph::QuarterPipeDomain::axial_spacing_fct(), oomph::QuarterTubeDomain::axial_spacing_fct(), oomph::CollapsibleChannelDomain::axial_spacing_fct(), oomph::AlgebraicCollapsibleChannelMesh< ELEMENT >::axial_spacing_fct_pt(), oomph::BackupMeshForProjection< GEOMETRIC_ELEMENT >::BackupMeshForProjection(), oomph::RefineableQElement< 3 >::build(), oomph::RefineableQElement< 1 >::build(), oomph::RefineableQElement< 2 >::build(), oomph::RefineableSolidQElement< 2 >::build(), oomph::RefineableSolidQElement< 3 >::build(), oomph::RefineableQElement< 3 >::check_integrity(), oomph::RefineableQElement< 1 >::check_integrity(), oomph::RefineableQElement< 2 >::check_integrity(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::check_integrity(), oomph::BoundaryNode< NODE_TYPE >::clear_copied_pointers(), oomph::ScalarAdvectionEquations< DIM >::compute_error(), oomph::EulerEquations< DIM >::compute_error(), oomph::Missing_masters_functions::construct_new_external_halo_master_node_helper(), oomph::Multi_domain_functions::construct_new_external_halo_master_node_helper(), oomph::Missing_masters_functions::construct_new_external_halo_node_helper(), oomph::Multi_domain_functions::construct_new_external_halo_node_helper(), oomph::RefineableTriangleMesh< ELEMENT >::construct_new_halo_node_helper(), oomph::RefineableTriangleMesh< ELEMENT >::construct_new_node_load_balance_helper(), oomph::TriangleMesh< ELEMENT >::convex_hull(), oomph::Data::copy(), oomph::Node::copy(), oomph::BackupMeshForProjection< GEOMETRIC_ELEMENT >::copy_onto_original_mesh(), oomph::AxisymmetricLinearElasticityEquationsBase::d2u_dt2_axisymmetric_linear_elasticity(), oomph::LinearWaveEquations< DIM >::d2u_dt2_lin_wave(), oomph::LinearElasticityEquationsBase< DIM >::d2u_dt2_linear_elasticity(), oomph::Data::Data(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::dc_dt_adv_diff_react(), oomph::SurfactantTransportInterfaceElement::dcdt_surface(), oomph::Mesh::delete_all_external_storage(), oomph::Problem::disable_discontinuous_formulation(), oomph::GeneralisedElement::dof_vector(), oomph::FSIAxisymFoepplvonKarmanElement< NNODE_1D, FLUID_ELEMENT >::dposition_dt(), oomph::Node::dposition_dt(), oomph::Node::dposition_gen_dt(), oomph::Time::dt(), oomph::AdvectionDiffusionEquations< DIM >::du_dt_adv_diff(), oomph::AxisymAdvectionDiffusionEquations::du_dt_axi_adv_diff(), oomph::AxisymmetricNavierStokesEquations::du_dt_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::du_dt_axi_nst(), oomph::AxisymmetricLinearElasticityEquationsBase::du_dt_axisymmetric_linear_elasticity(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::du_dt_cons_adv_diff(), oomph::du_dt_cons_axisym_adv_diff(), oomph::FluxTransportEquations< DIM >::du_dt_flux_transport(), oomph::LinearWaveEquations< DIM >::du_dt_lin_wave(), oomph::LinearisedAxisymmetricNavierStokesEquations::du_dt_linearised_axi_nst(), oomph::LinearisedNavierStokesEquations::du_dt_linearised_nst(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::du_dt_nst(), oomph::NavierStokesEquations< DIM >::du_dt_nst(), oomph::SphericalAdvectionDiffusionEquations::du_dt_spherical_adv_diff(), oomph::SphericalNavierStokesEquations::du_dt_spherical_nst(), oomph::UnsteadyHeatEquations< DIM >::du_dt_ust_heat(), oomph::WomersleyEquations< DIM >::du_dt_womersley(), oomph::Data::dump(), oomph::Node::dump(), oomph::Node::dx_dt(), oomph::Node::dx_gen_dt(), oomph::PoroelasticityEquations< 2 >::E(), oomph::FiniteElement::element_geometry(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::enable_ALE(), oomph::NavierStokesEquations< DIM >::enable_ALE(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::eqn_number(), oomph::ODEElement::exact_solution(), oomph::ODEElement::fill_in_contribution_to_jacobian(), oomph::ODEElement::fill_in_contribution_to_residuals(), for(), oomph::SphericalNavierStokesEquations::full_output(), oomph::Problem::get_data_to_be_sent_during_load_balancing(), oomph::RefineableElement::get_interpolated_values(), oomph::VorticitySmootherElement< ELEMENT >::get_interpolated_values(), oomph::Missing_masters_functions::get_required_master_nodal_information_helper(), oomph::Multi_domain_functions::get_required_master_nodal_information_helper(), oomph::Missing_masters_functions::get_required_nodal_information_helper(), oomph::Multi_domain_functions::get_required_nodal_information_helper(), oomph::RefineableTriangleMesh< ELEMENT >::get_required_nodal_information_helper(), oomph::RefineableTriangleMesh< ELEMENT >::get_required_nodal_information_load_balance_helper(), oomph::LinearWaveEquations< DIM >::get_source_lin_wave(), oomph::UnsteadyHeatEquations< DIM >::get_source_ust_heat(), oomph::SpectralPeriodicOrbitElement< NNODE_1D >::get_Z2_flux(), oomph::HermiteBeamElement::HermiteBeamElement(), if(), oomph::ChannelWithLeafletDomain::leaflet_pt(), oomph::AssemblyHandler::local_problem_dof(), oomph::AxisymmetricPoroelasticityEquations::mass_source(), oomph::Node::Node(), oomph::AlgebraicMesh::node_pt(), oomph::MacroElementNodeUpdateNode::node_update(), oomph::AlgebraicNode::node_update(), oomph::operator<<(), oomph::Domain::output(), oomph::MacroElement::output(), oomph::QMacroElement< 2 >::output(), oomph::LinearisedAxisymmetricNavierStokesEquations::output(), oomph::QMacroElement< 3 >::output(), oomph::LinearisedNavierStokesEquations::output(), oomph::AxisymmetricNavierStokesEquations::output(), oomph::ProjectableUnsteadyHeatElement< UNSTEADY_HEAT_ELEMENT >::output(), oomph::QMacroElement< 2 >::output_macro_element_boundaries(), oomph::TreeBasedRefineableMeshBase::p_adapt_mesh(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::p_nodal_index_axi_nst(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::p_refine(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::p_refine(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::p_refine(), oomph::Problem::parallel_sparse_assemble(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::PeriodicOrbitAssemblyHandler(), oomph::MeshAsGeomObject::position(), oomph::PseudoBucklingRing::position(), oomph::FSIAxisymFoepplvonKarmanElement< NNODE_1D, FLUID_ELEMENT >::position(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::pre_build(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::pre_build(), oomph::ILUZeroPreconditioner< CRDoubleMatrix >::preconditioner_solve(), oomph::Problem::prune_halo_elements_and_nodes(), oomph::Node::raw_value(), oomph::Data::read(), oomph::Node::read(), oomph::Data::read_values_from_vector(), oomph::Node::read_values_from_vector(), oomph::RefineableQSpectralElement< 3 >::rebuild_from_sons(), oomph::RefineableQSpectralElement< 2 >::rebuild_from_sons(), oomph::RefineableQSpectralElement< 1 >::rebuild_from_sons(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::rebuild_from_sons(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::rebuild_from_sons(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::rebuild_from_sons(), oomph::ImmersedRigidBodyTriangleMeshPolygon::reset_reference_configuration(), oomph::Data::resize(), oomph::QuarterCircleSectorDomain::s_squashed(), oomph::ContinuationStorageScheme::set_consistent_pinned_positions(), oomph::ContinuationStorageScheme::set_consistent_pinned_values(), oomph::NewmarkBDF< NSTEPS >::set_newmark_veloc_weights(), oomph::C1CurvedElementShape< 2, NNODE_1D >::set_of_value(), oomph::Node::set_position_time_stepper(), oomph::SuperLUSolver::set_solver_type(), oomph::Data::set_time_stepper(), oomph::Data::set_value(), oomph::Newmark< NSTEPS >::set_weights(), oomph::IMRBase::shift_time_positions(), oomph::Steady< 0 >::shift_time_positions(), oomph::Newmark< NSTEPS >::shift_time_positions(), oomph::NewmarkBDF< NSTEPS >::shift_time_positions(), oomph::BDF< NSTEPS >::shift_time_positions(), oomph::IMRBase::shift_time_values(), oomph::Steady< 0 >::shift_time_values(), oomph::Newmark< NSTEPS >::shift_time_values(), oomph::NewmarkBDF< NSTEPS >::shift_time_values(), oomph::BDF< NSTEPS >::shift_time_values(), oomph::TetMeshBase::snap_nodes_onto_geometric_objects(), oomph::UnstructuredTwoDMeshGeometryBase::snap_nodes_onto_geometric_objects(), oomph::BiCGStab< MATRIX >::solve_helper(), oomph::PolarNavierStokesEquations::source_fct_pt(), superlu_dist_distributed_matrix(), superlu_dist_global_matrix(), oomph::TreeBasedRefineableMeshBase::synchronise_nonhanging_nodes(), oomph::Time::time(), oomph::TimeStepper::time_derivative(), oomph::TimingHelpers::timer(), oomph::AlgebraicCylinderWithFlagMesh< ELEMENT >::update_node_update(), oomph::AlgebraicChannelWithLeafletMesh< ELEMENT >::update_node_update(), oomph::AlgebraicFishMesh< ELEMENT >::update_node_update(), oomph::Data::value(), oomph::Data::value_pt(), oomph::Node::x(), oomph::Node::x_gen(), oomph::Node::x_pt(), oomph::FishDomain::xi_tail(), oomph::AlgebraicFSIDrivenCavityMesh< ELEMENT >::~AlgebraicFSIDrivenCavityMesh(), oomph::AnnularDomain::~AnnularDomain(), oomph::ExplicitTimeSteppableObject::~ExplicitTimeSteppableObject(), oomph::FullCircleDomain::~FullCircleDomain(), oomph::TopologicallyRectangularDomain::~TopologicallyRectangularDomain(), oomph::TubeDomain::~TubeDomain(), and oomph::WarpedCubeDomain::~WarpedCubeDomain().

term_char

int term_char

Definition at line 645 of file cfortran.h.