fish_poisson_node_update.cc

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//LIC// Copyright (C) 2006-2016 Matthias Heil and Andrew Hazel
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//LIC//====================================================================
// Driver for solution of 2D Poisson equation in fish-shaped domain with
// adaptivity and mesh updates
 
// Generic oomph-lib headers
#include "generic.h"

// The Poisson equations
#include "poisson.h"

// The fish mesh 
#include "meshes/fish_mesh.h"

using namespace std;;

using namespace oomph;

//============ start_of_namespace=====================================
/// Namespace for const source term in Poisson equation
//====================================================================
namespace ConstSourceForPoisson
{ 
 
 /// Strength of source function: default value -1.0
 double Strength=-1.0;

/// Const source function
 void get_source(const Vector<double>& x, double& source)
 {
  source = Strength;
 }

} // end of namespace




//======start_of_problem_class========================================
/// Refineable Poisson problem in fish-shaped domain.
/// Template parameter identifies the element type.
//====================================================================
template<class ELEMENT>
class RefineableFishPoissonProblem : public Problem
{

public:

 /// Constructor
 RefineableFishPoissonProblem();

 /// Destructor: Empty
 virtual ~RefineableFishPoissonProblem(){}

 /// Update the problem specs after solve (empty)
 void actions_after_newton_solve() {}

 /// Update the problem specs before solve (empty)
 void actions_before_newton_solve() {}

 /// \short Overloaded version of the problem's access function to 
 /// the mesh. Recasts the pointer to the base Mesh object to 
 /// the actual mesh type.
 RefineableFishMesh<ELEMENT>* mesh_pt() 
  {
   return dynamic_cast<RefineableFishMesh<ELEMENT>*>(Problem::mesh_pt());
  }

 /// \short Doc the solution. Output directory and labels are specified 
 /// by DocInfo object
 void doc_solution(DocInfo& doc_info);

}; // end of problem class





//===========start_of_constructor=========================================
/// Constructor for adaptive Poisson problem in fish-shaped
/// domain.
//========================================================================
template<class ELEMENT>
RefineableFishPoissonProblem<ELEMENT>::RefineableFishPoissonProblem()
{ 
    
 // Build fish mesh -- this is a coarse base mesh consisting 
 // of four elements. We'll refine/adapt the mesh later.
 Problem::mesh_pt()=new RefineableFishMesh<ELEMENT>;
 
 // Create/set error estimator
 mesh_pt()->spatial_error_estimator_pt()=new Z2ErrorEstimator;
  
 // Set the boundary conditions for this problem: All nodes are
 // free by default -- just pin the ones that have Dirichlet conditions
 // here. Since the boundary values are never changed, we set
 // them here rather than in actions_before_newton_solve(). 
 unsigned num_bound = mesh_pt()->nboundary();
 for(unsigned ibound=0;ibound<num_bound;ibound++)
  {
   unsigned num_nod= mesh_pt()->nboundary_node(ibound);
   for (unsigned inod=0;inod<num_nod;inod++)
    {
     // Pin the single scalar value at this node
     mesh_pt()->boundary_node_pt(ibound,inod)->pin(0); 

     // Assign the homogenous boundary condition to the one
     // and only nodal value
     mesh_pt()->boundary_node_pt(ibound,inod)->set_value(0,0.0); 
    }
  }

 // Loop over elements and set pointers to source function
 unsigned n_element = mesh_pt()->nelement();
 for(unsigned i=0;i<n_element;i++)
  {
   // Upcast from FiniteElement to the present element
   ELEMENT *el_pt = dynamic_cast<ELEMENT*>(mesh_pt()->element_pt(i));

   //Set the source function pointer
   el_pt->source_fct_pt() = &ConstSourceForPoisson::get_source;
  }

 // Setup the equation numbering scheme
 cout <<"Number of equations: " << assign_eqn_numbers() << std::endl; 

} // end of constructor




//=======start_of_doc=====================================================
/// Doc the solution in tecplot format.
//========================================================================
template<class ELEMENT>
void RefineableFishPoissonProblem<ELEMENT>::doc_solution(DocInfo& doc_info)
{ 

 ofstream some_file;
 char filename[100];

 // Number of plot points in each coordinate direction.
 unsigned npts;
 npts=5; 

 // Output solution 
 sprintf(filename,"%s/soln%i.dat",doc_info.directory().c_str(),
         doc_info.number());
 some_file.open(filename);
 mesh_pt()->output(some_file,npts);
 some_file.close();

 // Output boundaries 
 sprintf(filename,"%s/boundaries%i.dat",doc_info.directory().c_str(),
         doc_info.number());
 some_file.open(filename);
 mesh_pt()->output_boundaries(some_file);
 some_file.close(); 

} // end of doc

 





//=================start_of_main==========================================
/// Demonstrate how to solve 2D Poisson problem in 
/// fish-shaped domain with black-box mesh adaptation
/// and domain updates in response to changes in the domain
/// shape.
//========================================================================
int main()
{

 //Set up the problem with 9 node refineable Poisson elements
 RefineableFishPoissonProblem<RefineableQPoissonElement<2,3> > problem;
 
 // Setup labels for output
 //------------------------
 DocInfo doc_info;
 
 // Set output directory
 doc_info.set_directory("RESLT"); 
 
 // Adjust the domain shape by changing the width of the fish
 //----------------------------------------------------------
 unsigned nstep=3;
 for (unsigned i=0;i<nstep;i++)
  {
   // Get pointer to GeomObject that defines the position of the
   // fish's back:
   GeomObject* fish_back_pt=problem.mesh_pt()->fish_back_pt();

   // Recast to pointer to Circle object to get access to the member function
   // that sets the y-position of the Circle's centre and decrease its
   // value, making the fish narrower
   dynamic_cast<Circle*>(fish_back_pt)->y_c()-=0.1;
   
   // Update the domain shape in response to the changes in its
   // boundary
   problem.mesh_pt()->node_update();

   // Solve the problem, allowing for up to two levels of refinement
   problem.newton_solve(2);
   
   //Output solution
   problem.doc_solution(doc_info);
   
   //Increment counter for solutions 
   doc_info.number()++;
  }
 
} // end of main