full_tube.cc

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//LIC// ====================================================================
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//LIC// Copyright (C) 2006-2016 Matthias Heil and Andrew Hazel
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//LIC//====================================================================
///Driver for a 3D navier stokes steady entry flow problem in a 
///complete straight tube

//Generic routines
#include "generic.h"
#include "navier_stokes.h"

// The mesh
#include "meshes/tube_mesh.h"

using namespace std;

using namespace oomph;


//=start_of_MyCylinder===================================
//A geometric object that represents the geometry of the domain
//================================================================
class MyCylinder : public GeomObject
{
public:

 /// Constructor that takes the radius of the tube as its argument
 MyCylinder(const double &radius) :
  GeomObject(3,3), Radius(radius) { }
 
/// Destructor
virtual~MyCylinder(){}

///Lagrangian coordinate xi
void position (const Vector<double>& xi, Vector<double>& r) const
{
 r[0] = xi[2]*Radius*cos(xi[1]);
 r[1] = xi[0];
 r[2] = -xi[2]*Radius*sin(xi[1]);
}


/// Return the position of the tube as a function of time 
/// (doesn't move as a function of time)
void position(const unsigned& t, 
              const Vector<double>& xi, Vector<double>& r) const
  {
   position(xi,r);
  }

private:

 ///Storage for the radius of the tube
 double Radius;

};

//=start_of_namespace================================================
/// Namespace for physical parameters
//===================================================================
namespace Global_Physical_Variables
{
 /// Reynolds number
 double Re=25;

} // end_of_namespace


//=start_of_problem_class=============================================
/// Entry flow problem in tapered tube domain
//====================================================================
template<class ELEMENT>
class SteadyTubeProblem : public Problem
{

public:

 /// Constructor: Pass DocInfo object and target errors
 SteadyTubeProblem(DocInfo& doc_info, const double& min_error_target,
                  const double& max_error_target);

 /// Destructor (empty)
 ~SteadyTubeProblem() {}

 /// \short Update the problem specs before solve 
 void actions_before_newton_solve();

 /// After adaptation: Pin redudant pressure dofs.
 void actions_after_adapt()
  {
   // Pin redudant pressure dofs
   RefineableNavierStokesEquations<3>::
    pin_redundant_nodal_pressures(mesh_pt()->element_pt());
  } 

 /// Doc the solution
 void doc_solution();

 /// \short Overload generic access function by one that returns
 /// a pointer to the specific  mesh
 RefineableTubeMesh<ELEMENT>* mesh_pt() 
  {
   return dynamic_cast<RefineableTubeMesh<ELEMENT>*>(Problem::mesh_pt());
  }

private:
 
 /// Doc info object
 DocInfo Doc_info;
 
 ///Pointer to GeomObject that specifies the domain volume
 GeomObject *Volume_pt;

}; // end_of_problem_class




//=start_of_constructor===================================================
/// Constructor: Pass DocInfo object and error targets
//========================================================================
template<class ELEMENT>
SteadyTubeProblem<ELEMENT>::SteadyTubeProblem(DocInfo& doc_info,
                                            const double& min_error_target,
                                            const double& max_error_target) 
 : Doc_info(doc_info)
{ 

 // Setup mesh:
 //------------

 // Create GeomObject that specifies the domain geometry
 //The radius of the tube is one 
 Volume_pt=new MyCylinder(1.0);
 
 //Define pi 
 const double pi = MathematicalConstants::Pi;
 
 //Set the centerline coordinates spanning the mesh
 //Tube is on length pi
 Vector<double> centreline_limits(2);
 centreline_limits[0] = 0.0;
 centreline_limits[1] = pi;

 //Set the positions of the angles that divide the outer ring
 //These must be in the range -pi,pi, ordered from smallest to
 //largest
 Vector<double> theta_positions(4);
 theta_positions[0] = -0.75*pi;
 theta_positions[1] = -0.25*pi;
 theta_positions[2] = 0.25*pi;
 theta_positions[3] = 0.75*pi;

 //Define the radial fraction of the central box (always halfway
 //along the radius)
 Vector<double> radial_frac(4,0.5);
 
 // Number of layers in the initial mesh
 unsigned nlayer=6;

 // Build and assign mesh
 Problem::mesh_pt()= new RefineableTubeMesh<ELEMENT>(Volume_pt,
                                                     centreline_limits,
                                                     theta_positions,
                                                     radial_frac,
                                                     nlayer);
 
 // Set error estimator 
 Z2ErrorEstimator* error_estimator_pt=new Z2ErrorEstimator;
 mesh_pt()->spatial_error_estimator_pt()=error_estimator_pt;
 
 // Error targets for adaptive refinement
 mesh_pt()->max_permitted_error()=max_error_target; 
 mesh_pt()->min_permitted_error()=min_error_target; 
 
 // Set the boundary conditions for this problem: All nodal values are
 // free by default -- just pin the ones that have Dirichlet conditions
 // here. 
 //Choose the conventional form by setting gamma to zero
 //The boundary conditions will be pseudo-traction free (d/dn = 0)
 ELEMENT::Gamma[0] = 0.0;
 ELEMENT::Gamma[1] = 0.0;
 ELEMENT::Gamma[2] = 0.0;

 //Loop over the boundaries
 unsigned num_bound = mesh_pt()->nboundary();
 for(unsigned ibound=0;ibound<num_bound;ibound++)
  {
   unsigned num_nod= mesh_pt()->nboundary_node(ibound);
   for (unsigned inod=0;inod<num_nod;inod++)
    {
     // Boundary 0 is the inlet symmetry boundary: 
     // Boundary 1 is the tube wall
     // Pin all values
     if((ibound==0) || (ibound==1))
      {
       mesh_pt()->boundary_node_pt(ibound,inod)->pin(0);
       mesh_pt()->boundary_node_pt(ibound,inod)->pin(1);
       mesh_pt()->boundary_node_pt(ibound,inod)->pin(2);
      }
    }
  } // end loop over boundaries

 // Loop over the elements to set up element-specific 
 // things that cannot be handled by constructor
 unsigned n_element = mesh_pt()->nelement();
 for(unsigned i=0;i<n_element;i++)
  {
   // Upcast from GeneralisedElement to the present element
   ELEMENT* el_pt = dynamic_cast<ELEMENT*>(mesh_pt()->element_pt(i));

   //Set the Reynolds number, etc
   el_pt->re_pt() = &Global_Physical_Variables::Re;
  }

 // Pin redudant pressure dofs
 RefineableNavierStokesEquations<3>::
  pin_redundant_nodal_pressures(mesh_pt()->element_pt());

 //Attach the boundary conditions to the mesh
 cout <<"Number of equations: " << assign_eqn_numbers() << std::endl; 

} // end_of_constructor


//=start_of_actions_before_newton_solve===================================
/// Set the inflow boundary conditions
//========================================================================
template<class ELEMENT>
void SteadyTubeProblem<ELEMENT>::actions_before_newton_solve()
{

 // (Re-)assign velocity profile at inflow values
 //--------------------------------------------
 unsigned ibound=0; 
 unsigned num_nod= mesh_pt()->nboundary_node(ibound); 
 for (unsigned inod=0;inod<num_nod;inod++)
  {
   // Recover coordinates of tube relative to centre position
   double x=mesh_pt()->boundary_node_pt(ibound,inod)->x(0);
   double z=mesh_pt()->boundary_node_pt(ibound,inod)->x(2);
   //Calculate the radius
   double r=sqrt(x*x+z*z);  

   // Blunt profile for axial velocity (component 1 at the inlet)
   mesh_pt()->boundary_node_pt(ibound,inod)->
    set_value(1,(1.0-pow(r,10.0)));
  }

} // end_of_actions_before_newton_solve


//=start_of_doc_solution==================================================
/// Doc the solution
//========================================================================
template<class ELEMENT>
void SteadyTubeProblem<ELEMENT>::doc_solution()
{ 
 //Output file stream
 ofstream some_file;
 char filename[100];

 // Number of plot points
 unsigned npts;
 npts=5; 

 //Need high precision for large radii of curvature
 //some_file.precision(10);
 // Output solution labelled by the Reynolds number
 sprintf(filename,"%s/soln_Re%g.dat",Doc_info.directory().c_str(),
         Global_Physical_Variables::Re);
 some_file.open(filename);
 mesh_pt()->output(some_file,npts);
 some_file.close();

} // end_of_doc_solution

 


////////////////////////////////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////


//=start_of_main=======================================================
/// Driver for 3D entry flow into a straight tube. 
//=====================================================================
int main(int argc, char* argv[]) 
{
 //The purpose of this code is to test that the position of nodes on 
 //curvilinear boundaries are correctly updated after nodes that were 
 //hanging become non-hanging.
 unsigned max_adapt=1;
 double max_error_target=0.02 , min_error_target=0.002;


 // Set up doc info
 DocInfo doc_info;
 
 // Do Taylor-Hood elements
 //------------------------
 {
  // Set output directory
  doc_info.set_directory("RESLT_TH");
  
  // Step number
  doc_info.number()=0;
  
  // Build problem
  SteadyTubeProblem<RefineableQTaylorHoodElement<3> > 
   problem(doc_info,min_error_target,max_error_target);
  
  cout << " Doing Taylor-Hood elements " << std::endl;

  for(unsigned i=0;i<2;i++)
   {
    // Solve the problem 
    problem.newton_solve(max_adapt);
    // Doc solution after solving
    problem.doc_solution();

    Global_Physical_Variables::Re += 25.0;
    ++doc_info.number();
   }
 }

 exit(1);
 // Do Crouzeix-Raviart elements
 //------------------------
 {
  // Set output directory
  doc_info.set_directory("RESLT_CR");
  
  // Step number
  doc_info.number()=0;
  
  // Build problem
  SteadyTubeProblem<RefineableQCrouzeixRaviartElement<3> > 
   problem(doc_info,min_error_target,max_error_target);
  
  cout << " Doing Crouzeix-Raviart elements " << std::endl;

  for(unsigned i=0;i<2;i++)
   {
    // Solve the problem 
    problem.newton_solve(max_adapt);
    // Doc solution after solving
    problem.doc_solution();

    Global_Physical_Variables::Re += 25.0;
    ++doc_info.number();
   }
 }
} // end_of_main